PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g21260
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bZIP
Protein Properties Length: 421aa    MW: 45839.1 Da    PI: 7.0836
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g21260genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_150.25.5e-16216270357
                XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                + kr+rr+ +NRe+ArrsR+RK++++ eL + v++L ae ++L k+l  ++++++
  Tp4g21260 216 DAKRARRMLSNRESARRSRRRKQEQMNELDTQVAQLRAEHSTLLKRLGDMNQKYD 270
                68******************************************99998888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.4E-18214278IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.7E-11215269No hitNo description
PROSITE profilePS5021711.358216270IPR004827Basic-leucine zipper domain
PfamPF001701.8E-13217270IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.61E-10218268No hitNo description
PROSITE patternPS000360221236IPR004827Basic-leucine zipper domain
PfamPF124982.2E-13285376IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000693Biological Processpositive regulation of seed maturation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MNTVFSVDDF TDSYWQSPAP GPVPGDGMTR SQSEWALQRL LEEISVPAGS SISSSSATDN  60
AIRRSPLQFQ SDSSVLRPEE AASDIADVVE IQKPHNARRL AGTRNRAPSS VEIDPNQYQA  120
ILKSKLELAC AAVALRVATL KPEDSSASSG NQKQPSAIGS QTQGPIVAQM SPAVSSVSAA  180
PSLDTQKATS GSSRYDSDDE DLDGDTETTE NGDPADAKRA RRMLSNRESA RRSRRRKQEQ  240
MNELDTQVAQ LRAEHSTLLK RLGDMNQKYD TAVVDNRILK ADIETLRTKV KMAEETVKRV  300
TGTNPLLLAR PNSLPFNSTP TDSSRPNLNH ILKPAIPKIT GMITDQRLEN NFANNTVVPL  360
NMSPVSNIGL KNSTKMPPLP QNVSLSNRLP EQVNPFVPTS SSAYETLPHW NPAVGKNIPH  420
D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230237RRSRRRKQ
2232237SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'-ACGT-3' box, especially present in G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of seed storage protein (SSP) encoding gene promoters (e.g. At2S and CRU3) and promotes their expression in seeds when in complex with ABI3 and BZIP53. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:19261733, ECO:0000269|PubMed:19531597}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g21260
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010520981.11e-138PREDICTED: basic leucine zipper 25
SwissprotQ9M1G61e-114BZP25_ARATH; Basic leucine zipper 25
TrEMBLA0A087GXV21e-125A0A087GXV2_ARAAL; Uncharacterized protein
STRINGXP_010520981.11e-137(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58482645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54620.11e-108basic leucine zipper 25
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  3. Jain P, et al.
    A-ZIP53, a dominant negative reveals the molecular mechanism of heterodimerization between bZIP53, bZIP10 and bZIP25 involved in Arabidopsis seed maturation.
    Sci Rep, 2017. 7(1): p. 14343
    [PMID:29084982]
  4. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]