PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g23440
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 252aa    MW: 27943.8 Da    PI: 8.2205
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g23440genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.31.7e-1069115354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                r+h+e+ErrRR+riNs +++Lr +l  +      K +Ka+ L k+v+ +k+L
  Tp4g23440  69 RNHKEAERRRRERINSHLNKLRNVLSCN-----SKTDKATLLAKVVQRVKEL 115
                58***********************997.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.53866115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-1369130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-869115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-1269129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-1072121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MQPESSDQML YSFLAGNEIS GGGFCVSGDY MSAMQSLCGS SSSTSSYYPL AISGIGETIA  60
QDRAIAALRN HKEAERRRRE RINSHLNKLR NVLSCNSKTD KATLLAKVVQ RVKELKQQTR  120
EISDSDQTLL PSETDEITVL HYGDYSNDGH IIFKASLCCD DRSDLLPDIM EILKSLQMKT  180
LRAEMVTLGG RTRSLLVVAA DKEMHGVESV HFLQNALKSL LERSSKSLME RSSGGGGERS  240
KRRRALDHII MV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17479ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g23440
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1190590.0AK119059.1 Arabidopsis thaliana At2g41130 mRNA for putative bHLH transcription factor (bHLH106), complete cds, clone: RAFL21-40-D23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411379.11e-165transcription factor bHLH106
SwissprotO806741e-149BH106_ARATH; Transcription factor bHLH106
TrEMBLV4MCB61e-163V4MCB6_EUTSA; Uncharacterized protein
STRINGXP_006411379.11e-164(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36422762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.11e-139bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]