PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g24100
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 284aa    MW: 31722 Da    PI: 8.5825
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g24100genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.91.9e-06256278223
                EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                +Cp+C++ F+++ +L++Hi + H
  Tp4g24100 256 VCPKCSRGFRDPVDLVNHIERdH 278
                7******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183105.23E-12457No hitNo description
PROSITE profilePS510397.8261056IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.3E-101152IPR000058Zinc finger, AN1-type
PfamPF014282.4E-131349IPR000058Zinc finger, AN1-type
SMARTSM001543.2E-61352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.102.6E-1091149IPR000058Zinc finger, AN1-type
SuperFamilySSF1183103.27E-993143No hitNo description
PROSITE profilePS510398.2398151IPR000058Zinc finger, AN1-type
PfamPF014284.2E-8101140IPR000058Zinc finger, AN1-type
SMARTSM001540.0089101142IPR000058Zinc finger, AN1-type
PROSITE profilePS501579.91218246IPR007087Zinc finger, C2H2
SMARTSM003550.043218241IPR015880Zinc finger, C2H2-like
PfamPF056052.2E-6220279IPR008598Drought induced 19 protein type, zinc-binding domain
PROSITE patternPS000280220241IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.7E-4222241IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003557.9255278IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.954255283IPR007087Zinc finger, C2H2
PROSITE patternPS000280257278IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSVDICKQ IDFLPFTCDR CLQVFCLDHR SYMKHSCPKG DREDVTVVIC  60
PLCAKGVRLN PKEDPNITWE KHVNTDCDPS NYEKATKKKR CPVPRCKEQL TFSNTIKCRD  120
CNIDHCLKHR FGPDHTCPGP RKPEPSFPFM GFLSSSSRKE TKTTRHNKAP ASTSSTSSSS  180
SSRWSNLLSS AEAGISRLGN DISNKLQFSS SSNDGLVEVC PQCGAKFSSV AVLVEHVEKT  240
HERNKKQNHG KVTVDVCPKC SRGFRDPVDL VNHIERDHRG TSKA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g24100
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0652720.0AY065272.1 Arabidopsis thaliana unknown protein (At2g41835) mRNA, complete cds.
GenBankAY0966200.0AY096620.1 Arabidopsis thaliana unknown protein (At2g41835) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505969.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
SwissprotQ8VZ421e-175SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLA0A1J3INK21e-179A0A1J3INK2_NOCCA; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
STRINGXP_010505969.11e-180(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39082754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-172C2H2 family protein