PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g24350
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 666aa    MW: 73145.7 Da    PI: 9.652
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g24350genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.23.3e-121062147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqky 47
                     ++ W t+E++ll++av+++G+++W++++++++        +t+  c+++++++
        Tp4g24350 10 KQTWGTWEELLLACAVHRHGTESWSSVSAEIQkrspnlCSLTASTCRHKYFDL 62
                     789*****************************777777566777788887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.26548IPR017877Myb-like domain
SuperFamilySSF466893.18E-6852IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-6851IPR009057Homeodomain-like
SMARTSM007171.6E-6965IPR001005SANT/Myb domain
PfamPF002491.6E-121062IPR001005SANT/Myb domain
CDDcd001671.68E-51263No hitNo description
SMARTSM002977.3E-15286395IPR001487Bromodomain
SuperFamilySSF473701.57E-16293398IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.2E-15299399IPR001487Bromodomain
PfamPF004397.0E-12303381IPR001487Bromodomain
PROSITE profilePS5001411.602305376IPR001487Bromodomain
CDDcd043696.94E-15305390No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MAKPENDDKK QTWGTWEELL LACAVHRHGT ESWSSVSAEI QKRSPNLCSL TASTCRHKYF  60
DLKRRFSHEI ALQGSDKLES VAEISTVPWL EELRRLRVDE LRRQVEQYDL SISSLQSKVK  120
RLEEEREMSL DEPDTKIENS DLDKIVAKAE LRWESDCHSG EPVSMPPVLL VKESISPDPI  180
DNSPGTESVN VKSEEEKAGV VDGGEGKVTG EDSCRGSCES VEKESAANSE RVESGRGTEL  240
TESMAESEGG ANGEEEEWKE TSDVQSSASL PRKGTSELDN EDQSPSAKDF PVESQPSISF  300
VEILLSQPCG SHFSRRLETQ ETPEYGKIIR QHVDFKIIQK RVKESCYKSS TSKLFRDLLL  360
LINNAKVFYH KGSSEFNSAE HLHQLVKKQM TTTLKRPREI SPAKEKSLEL VAFKDAVVAV  420
SSKPISQKPR MSVPIIACRR RSSLAAKPLV SPSGADKKSK KTDQVFNDEK PVSGKDETSG  480
KDDETLISKK TTRGKTSSGK RVAIRNVKNH DSSLNVDDDS KGRVSSEVKK TDEEKKGNNN  540
SNKSGSSKKK SAASFLKRMK GGSSSDTVVE ASKPSSAAGY STTGKGGAEQ KKNNSNKADA  600
KKRAATTGGN EKGSPVKNKN NGRAIKREAA PSSSSSPILA KRSREAGEKK AASSPSSTRL  660
KKRVRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1658664RLKKRVR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g24350
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013744975.10.0DNA repair protein complementing XP-C cells homolog isoform X2
RefseqXP_022574151.10.0DNA repair protein complementing XP-C cells homolog isoform X2
TrEMBLA0A397ZXF00.0A0A397ZXF0_BRACM; Uncharacterized protein
STRINGAT2G42150.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65302539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.10.0DNA-binding bromodomain-containing protein