PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g24560
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 212aa    MW: 24059.2 Da    PI: 8.8301
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g24560genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.9e-054870123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y+C+ C + F++   L  H+++H
  Tp4g24560 48 YTCSFCRREFRSAQALGGHMNVH 70
               9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.15E-64574No hitNo description
Gene3DG3DSA:3.30.160.608.8E-44673IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00614870IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.2194875IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MKRTHLASFS SRNETQEEEG DTNGNDRIIM NHYKNYEAGL IPWPPKNYTC SFCRREFRSA  60
QALGGHMNVH RRDRAKLRQI PSWLFEPHHH IPLPNPKPNP NSSSSSSTTP APLEPSLTNQ  120
ISRTTPFSSD RFHLLDNTTS YGGLVVEREK IKNNVCSREL KKSAMDSCHA ARCEISRGDL  180
MNMKDGVMGL EVGMDLRNPK QVLDLELRLG CL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A8e-134370229superman protein
2l1o_A8e-134370229Transcriptional regulator SUPERMAN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|Ref.4}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g24560
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553370.0AC155337.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH117N09, complete sequence.
GenBankAC1892200.0AC189220.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010H06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142836.11e-127PREDICTED: transcriptional regulator SUPERMAN
SwissprotQ9SLB81e-121ZFP11_ARATH; Zinc finger protein 11
TrEMBLM4CKF71e-126M4CKF7_BRARP; Uncharacterized protein
STRINGBra004692.1-P1e-127(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM95752435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.11e-111zinc finger protein 11