PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp4g24580

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

LBD

Protein Properties

Length: 199aa MW: 22422.1 Da PI: 6.6916

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g24580	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.3	1.3e-38	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +C aCk+lrrkC ++Cv+apyf+++q +++fa++h++FGasn +kll++lp e+r +a+ +++yeA+ar++dP+yG++++i++lqqq+ +l+a+l+ lk+ Tp4g24580 7 PCGACKFLRRKCIHGCVFAPYFCHDQgASHFAAIHQVFGASNASKLLSHLPMEDRCEAAITIYYEAQARLQDPIYGCISHIFSLQQQVVNLQAQLEILKQ 106 7***********************89*******************************************************************999 PP DUF260 100 e 100 + Tp4g24580 107 Q 107 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.941	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.8E-36	7	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MAGSGSPCGA CKFLRRKCIH GCVFAPYFCH DQGASHFAAI HQVFGASNAS KLLSHLPMED 60 RCEAAITIYY EAQARLQDPI YGCISHIFSL QQQVVNLQAQ LEILKQQATQ SMMATNTPSL 120 ENPNYYRDIK LQQLQQSLDL HRHHNNHHQD TSLETESNSD LKNIMTSYPD LDQHLNTFNQ 180 YHNGGNDILS ASFGYISYS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-34	3	102	7	105	LOB family transfactor Ramosa2.1
5ly0_B	1e-34	3	102	7	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g24580

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:15659631}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473848	1e-149	AB473848.1 Arabidopsis thaliana ASL15 mRNA for ASYMMETRIC LEAVES2-like 15 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013690686.1	1e-129	LOB domain-containing protein 17-like
Refseq	XP_013747423.1	1e-129	LOB domain-containing protein 17-like
Swissprot	Q9SLB6	1e-100	LBD17_ARATH; LOB domain-containing protein 17
TrEMBL	A0A078FPN0	1e-128	A0A078FPN0_BRANA; BnaC04g48290D protein
STRING	Bo4g191540.1	1e-127	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42440.1	3e-92	LBD family protein

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]