PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp4g25390

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

FAR1

Protein Properties

Length: 209aa MW: 24126.8 Da PI: 9.4399

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g25390	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.8	3.3e-27	40	128	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++Y++++GF +r+ + ++s+++g+i r+f C+keg+ + + k+ + r++r++tr gCka+++vk +++gkw++tk+++eHnH+l+ Tp4g25390 40 FYDDYSRRLGFVMRVMSCRRSEKDGRILARRFGCNKEGHCVSIRGKSGSVRKPRPSTREGCKAMIHVKYDRSGKWVITKFVKEHNHPLV 128 9************************************999988889*************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.8E-25	40	128	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MAAIFSFLSF TAFAMSVEDD STIEPCEGIE FESEYAAKMF YDDYSRRLGF VMRVMSCRRS 60 EKDGRILARR FGCNKEGHCV SIRGKSGSVR KPRPSTREGC KAMIHVKYDR SGKWVITKFV 120 KEHNHPLVAT PREARQTLDE KDKRIQELTI ELRNKKRLCA AYKQQLDAFA KIVEEHNNRI 180 AKKVESVVEN LKEFEPIELE LLQSKQGAL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g25390

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT002891	1e-179	BT002891.1 Arabidopsis thaliana clone RAFL14-97-G02 (R20421) unknown protein (At2g43280) mRNA, complete cds.
GenBank	BT004409	1e-179	BT004409.1 Arabidopsis thaliana clone U20421 unknown protein (At2g43280) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006397492.1	1e-126	protein FAR1-RELATED SEQUENCE 5
TrEMBL	V4KM15	1e-125	V4KM15_EUTSA; Uncharacterized protein
STRING	XP_006397492.1	1e-126	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3918	28	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-125	FAR1 family protein