PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g26250
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 220aa    MW: 25168 Da    PI: 9.9392
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g26250genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.76.5e-161362111596
                -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                +l++p +fa++h+ k   +++ ++ d++ + Wev + ++++s   ++++GW+  +++ gL +gDf++F+l++   +e+v+ v
  Tp4g26250 136 LLTIPTDFAKKHMPK--VTTKFIIHDPKWKPWEVVYVFSNGS--KLFSSGWRFLARDYGLAVGDFCTFRLIKP--KEMVLEV 211
                689*********644..345899*************887776..579**********************9974..4445555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.347144IPR003340B3 DNA binding domain
SuperFamilySSF1019366.67E-8544IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-8845IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-19117213IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-21118215IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.858122215IPR003340B3 DNA binding domain
CDDcd100171.07E-14125212No hitNo description
SMARTSM010192.1E-16125215IPR003340B3 DNA binding domain
PfamPF023624.7E-13134208IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MGSYLMERKG WEKFLNDNQL GDDEFLTFTN EGNNCLSVHI FQKNCKEILR PRETTIIVSS  60
SSSSYVKKED MSCIYPIRAQ STRRGAKGNK ERVDKEEERK KPKKMKKKAE NNVDAASSSS  120
SVATFSLTIK QSHLLLLTIP TDFAKKHMPK VTTKFIIHDP KWKPWEVVYV FSNGSKLFSS  180
GWRFLARDYG LAVGDFCTFR LIKPKEMVLE VLHESPCSGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g26250
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024010696.17e-94B3 domain-containing protein At5g18090
TrEMBLA0A087H5303e-95A0A087H530_ARAAL; Uncharacterized protein
STRINGA0A087H5304e-96(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.11e-43B3 family protein