PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g26500
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 654aa    MW: 72257.3 Da    PI: 9.8629
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g26500genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.8e-0949100246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqk 46 
                      ++W t E++ll++avk++G g+W+++a ++           ++++c+ ++++
        Tp4g26500  49 QAWGTCEELLLACAVKRHGFGDWDSVATEVRsrssisaVFVSANNCRQKYRD 100
                      78*****************************666666633367777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.02843102IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.1E-543103IPR009057Homeodomain-like
SuperFamilySSF466891.7E-643104IPR009057Homeodomain-like
SMARTSM007172.0E-447104IPR001005SANT/Myb domain
PfamPF002491.2E-849101IPR001005SANT/Myb domain
CDDcd001678.24E-655101No hitNo description
SMARTSM002972.8E-22302411IPR001487Bromodomain
SuperFamilySSF473706.54E-18304409IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.1E-16309430IPR001487Bromodomain
CDDcd043693.83E-16316406No hitNo description
PfamPF004397.2E-13317395IPR001487Bromodomain
PROSITE profilePS5001413.23321392IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MTKEEEAGSC SMNDDTNNNN NDYVCSDDYN NIGEEDDDNN NTNLKHKSQA WGTCEELLLA  60
CAVKRHGFGD WDSVATEVRS RSSISAVFVS ANNCRQKYRD LNRRFQESVG GESDAAATAT  120
ATTAEEEGGN IPWLEQLRSL RVAELRREVQ QYDVSILSLQ LKVKKLEEER EGDQKPDLED  180
TRKGERSEND GSESERREKA VSTAEESDGG SRSMNESNST ASGEKTAGED GKVGGDEPSQ  240
NRDHSGGNNP DPETVYKTEE GSEASHSGEL GESGTSGRKW KRKRRKHSAD RKNNHDEDDV  300
GEIRSTVSKS QPLIGLVDLI RSHPRGSLFE RRLRSQETKD YNSLVKQHLD IETIQRKLKQ  360
GSYKSSSLTF YRDLQLLFTN AITFFPSSSS ESMAAHELRT IVSEEMRKET GKSGPRLINQ  420
EASAMTSIKS DAETSESSLE RQQKSSAPLV VCKRRRFVSA KASPSSSSFS QKEETLSEEK  480
ENIETGGRSS RRATKVVAAA VIAHDTKTGK GKNKQKQTES KTNSSNDNTK NSSKQEKGKT  540
AKMVSLDKKK SVADFLKRLK KNSPQKEGKD QNKSGGNGKK ESKSKPRELR SNTVGKKKKA  600
EVENTPVKRA PGRPPQKKAV EAVATATASA SGKRGRESGS TGKDNKQPKK RSRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277285RKWKRKRRK
2280285KRKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g26500
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024010732.10.0LOW QUALITY PROTEIN: uncharacterized protein LOC18015503
TrEMBLA0A1J3K5560.0A0A1J3K556_NOCCA; Uncharacterized protein
STRINGAT2G44430.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.10.0DNA-binding bromodomain-containing protein