PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g27440
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family LBD
Protein Properties Length: 188aa    MW: 21039.2 Da    PI: 7.4346
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g27440genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.27.7e-40171171100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                +C aCk+lrrkC+++Cv+apyf aeq +++fa+vhk+FGasn +k+l++lp ++r da+++l+yeA ar+rdPvyG+vg++++lq+q+++l+ae+a++++
  Tp4g27440  17 PCGACKFLRRKCVRGCVFAPYFDAEQgTARFAAVHKVFGASNASKMLQRLPLHKRLDAVATLCYEALARLRDPVYGSVGHLFSLQHQVMNLQAEIAHVHA 116
                7***********************9989********************************************************************9997 PP

     DUF260 100 e 100
                +
  Tp4g27440 117 R 117
                6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.36716118IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-3817115IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MVTCNLNGGG RGGGEGPCGA CKFLRRKCVR GCVFAPYFDA EQGTARFAAV HKVFGASNAS  60
KMLQRLPLHK RLDAVATLCY EALARLRDPV YGSVGHLFSL QHQVMNLQAE IAHVHARLST  120
FQRFSLISPQ QTEQPPFEYP LESTNMDVVW EEQQLPQAIN EDEEFQELAM QFFSKYFPIV  180
KLPVCTLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-37131187111LOB family transfactor Ramosa2.1
5ly0_B3e-37131187111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g27440
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894981e-124AC189498.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086L12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436454.11e-100PREDICTED: LOB domain-containing protein 19-like
RefseqXP_018436455.11e-100PREDICTED: LOB domain-containing protein 19-like
SwissprotO221322e-90LBD19_ARATH; LOB domain-containing protein 19
TrEMBLV4KMP15e-98V4KMP1_EUTSA; Uncharacterized protein
STRINGXP_006397722.19e-99(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.15e-94LOB domain-containing protein 19