PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g27690
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MIKC_MADS
Protein Properties Length: 222aa    MW: 25472.6 Da    PI: 8.7155
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g27690genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF23.38.3e-08926118
               S---SHHHHHHHHHHHHH CS
     SRF-TF  1 krienksnrqvtfskRrn 18
               krienk+nrqvtfskRrn
  Tp4g27690  9 KRIENKINRQVTFSKRRN 26
               79***************8 PP
2K-box77.43.7e-2661139583
      K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                 +++  e+ +++++qe++kLk+++e+L r++RhllGedL+++++keLq Le+qLe +l+  R++K++ l +  ++l+ k
  Tp4g27690  61 LSNNRPEESTQNWCQEVTKLKSKYESLVRTNRHLLGEDLGEMNVKELQALERQLEAALTATRQRKERQLGDINKQLKIK 139
                455578888************************************************************9999999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.6145IPR002100Transcription factor, MADS-box
SMARTSM004322.5E-16144IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-18273IPR002100Transcription factor, MADS-box
PfamPF003196.9E-51026IPR002100Transcription factor, MADS-box
PfamPF014862.7E-2167139IPR002487Transcription factor, K-box
PROSITE profilePS5129711.770168IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048437Biological Processfloral organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MGRGRVEMKR IENKINRQVT FSKRRNVALI VFSSRGKLYE FGSVGVEKTI ERYHRCYNCS  60
LSNNRPEEST QNWCQEVTKL KSKYESLVRT NRHLLGEDLG EMNVKELQAL ERQLEAALTA  120
TRQRKERQLG DINKQLKIKF ETEGHAFKSF QDLWTNSAAS VVGDAHNSEF PVQSSHPDSM  180
DCNTEPFLQI GFQQHYYVQG EGSSVSKSNA ACETNFVQGW VL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Forms a heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00315DAPTransfer from AT2G45650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g27690
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5080551e-124AJ508055.1 Brassica oleracea var. botrytis mRNA for MADS-box protein AGL6-a (agl6-a gene), long splice variant.
GenBankAJ5084091e-124AJ508409.1 Brassica oleracea var. botrytis mRNA for MADS-box protein AGL6-a (agl6-a gene), short splice variant.
GenBankKC9843011e-124KC984301.2 Brassica oleracea var. viridis AGL6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_182089.11e-144AGAMOUS-like 6
SwissprotP293861e-145AGL6_ARATH; Agamous-like MADS-box protein AGL6
TrEMBLQ1PEU31e-142Q1PEU3_ARATH; AGAMOUS-like protein 6
STRINGAT2G45650.11e-143(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43022654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.11e-133AGAMOUS-like 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Dreni L,Zhang D
    Flower development: the evolutionary history and functions of the AGL6 subfamily MADS-box genes.
    J. Exp. Bot., 2016. 67(6): p. 1625-38
    [PMID:26956504]