PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp4g28640

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

Dof

Protein Properties

Length: 371aa MW: 40601.5 Da PI: 8.9232

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g28640	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.6	6.5e-39	75	136	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+sss Tp4g28640 75 PQEKLNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSSS 136 6899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-26	74	126	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.3E-33	77	133	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.901	79	133	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	81	117	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009409	Biological Process	response to cold
GO:0009416	Biological Process	response to light stimulus
GO:0009845	Biological Process	seed germination
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MDATKWTQGF QEMMNAKPME QIMISNNNTH QSNTTSNARP NTILTTNGVS NAGATVSGVS 60 NNNNTAVVVE RKARPQEKLN CPRCNSTNTK FCYYNNYSLT QPRYFCKGCR RYWTEGGSLR 120 NVPVGGSSRK NKRSSSSSSS SNILQTTPSS LGLTTTLPDL NPPILFSNQI PNKSKGSSQD 180 LNLLSFPVMQ DQHHHHHVHM SQFLQMPKME GNGNITHQQP SSSSSLYGSS SSPVSALELL 240 RTGVNVSSRS GISSFMPSGP MMDSSNNVLY TSSGFPTMVD YKPSNLSFST DHQGLGHNNN 300 NRSDDGHSDH HQGRVLFPFG DQMKELSSSI TQEVDHDDNQ QQKSHGNNNN SSPNNGYWSG 360 MFSTTGGGSS W

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MDATKWTQGF QEMMNAKPME QIMISNNNTH QSNTTSNARP NTILTTNGVS NAGATVSGVS  60
NNNNTAVVVE RKARPQEKLN CPRCNSTNTK FCYYNNYSLT QPRYFCKGCR RYWTEGGSLR  120
NVPVGGSSRK NKRSSSSSSS SNILQTTPSS LGLTTTLPDL NPPILFSNQI PNKSKGSSQD  180
LNLLSFPVMQ DQHHHHHVHM SQFLQMPKME GNGNITHQQP SSSSSLYGSS SSPVSALELL  240
RTGVNVSSRS GISSFMPSGP MMDSSNNVLY TSSGFPTMVD YKPSNLSFST DHQGLGHNNN  300
NRSDDGHSDH HQGRVLFPFG DQMKELSSSI TQEVDHDDNQ QQKSHGNNNN SSPNNGYWSG  360
MFSTTGGGSS W

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00319	DAP	Transfer from AT2G46590	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g28640

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352859	0.0	AK352859.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-N20.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006294447.1	0.0	dof zinc finger protein DOF2.5 isoform X1
Swissprot	Q9ZPY0	0.0	DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBL	R0HPY2	0.0	R0HPY2_9BRAS; Uncharacterized protein
STRING	XP_006294447.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2528	26	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46590.2	1e-173	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]