PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g28890
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 311aa    MW: 34838.9 Da    PI: 7.4045
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g28890genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.93.7e-3232137199
                EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS..SEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr..sefelv 93 
                f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  ++ +l+
  Tp4g28890  32 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSTNEKGLLLNFEDLTGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRCvGDsgRDSRLF 131
                89***************************966778999*************************************************4433324677788 PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                + ++r+
  Tp4g28890 132 IDWRRR 137
                888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-4127139IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-3029124IPR015300DNA-binding pseudobarrel domain
CDDcd100173.80E-2630132No hitNo description
SMARTSM010192.8E-2332138IPR003340B3 DNA binding domain
PROSITE profilePS5086314.69232138IPR003340B3 DNA binding domain
PfamPF023622.4E-2932137IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MMTDLSLTRE GEEDEEAEAK KPIEEVEREH MFDKVVTPSD VGKLNRLVIP KQHAERYFPL  60
DSSTNEKGLL LNFEDLTGKS WRFRYSYWNS SQSYVMTKGW SRFVKDKKLD AGDIVSFQRC  120
VGDSGRDSRL FIDWRRRPKV PDHPTSIAHF AAGAMFPRFY SFPTATTSTS YNNLYNHQQP  180
RHHHNYPQIP REFGYGYLVR SVDQRAVMAD PLVIESVPVM MHGGARVNQA VNVGAAGKRL  240
RLFGVDMECG ESGVTNSTEE ESSSSGGSLP RGEGGAGGAS PSSSLFQLRL GISSSEDDHF  300
SKKGKSSMPF H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-78271403116B3 domain-containing transcription factor NGA1
5os9_B1e-78271403116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g28890
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324910.0AC232491.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB049N04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482618.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
RefseqXP_018482646.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
SwissprotO827991e-158NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A078IPA90.0A0A078IPA9_BRANA; BnaC03g72370D protein
STRINGBo3g039420.11e-180(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-147B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]