PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g29060
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family SBP
Protein Properties Length: 929aa    MW: 104015 Da    PI: 6.1374
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g29060genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.61.6e-42143220178
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                +Cqve+Ceadls++k+yhrrhkvCe+hska++++v g++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  Tp4g29060 143 VCQVENCEADLSKVKDYHRRHKVCEMHSKATSAIVGGIMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 220
                6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.3E-34137205IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.616141218IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.62E-39143222IPR004333Transcription factor, SBP-box
PfamPF031107.3E-31144217IPR004333Transcription factor, SBP-box
SuperFamilySSF484031.71E-7717818IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.0E-7718819IPR020683Ankyrin repeat-containing domain
CDDcd002049.41E-9720816No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 929 aa     Download sequence    Send to blast
MEARIEGEPQ HFYGFRAMDL RSVGKKSVEW DLNDWKWDGD LFVATQLNPG GSETMGRQLF  60
PLGNSSNSSS SCSDEGNNTE LTVTRKREIE KKRRAAATGE HNNGGGLTLK LGDNGYDLNG  120
EREGNSAAKK TKFGGGGVTN RSVCQVENCE ADLSKVKDYH RRHKVCEMHS KATSAIVGGI  180
MQRFCQQCSR FHVLQEFDEG KRSCRRRLAG HNKRRRKTNP EPGTNGNPTS DDHQSSNYLL  240
ISLLKILSNM HYNPGDQDLM SHLLKSLVSH AGEQLGKNLV ELLLQGRSQA SLNIGNSGLL  300
AIEQATQEDL KQAPEIPRQE LYANGTATEN RLEKQVKVND FDLNDIYIDS DDGTDIERSP  360
PPTNPATSSL DYPSWVHQSS PPQTSRNSDS ASDQSPSSSS EDAQMRTGRI VFKLFGKEPN  420
DFPVVLRGQI LDWLSHSPTD MESYIRPGCI VLTIYLRQAE TAWEELSDDL GFSLRKLLDL  480
SDDPLWTTGW IYVRVQNQLA FLYNGQVAID TSLPLRSRDY GHIISVRPLA VAATRKAQFT  540
VKGINLRRPG TSLLCAVEGK YLIQETKHDS TKENDDLKEN NEIVESVTFS CDLPITSGRG  600
FMEIEDQGLS SSFFPFIVVE DDDVCSELRI LEATLEFTGT DSAKQAMEFI HEIGWLLHRS  660
KLGESDPNPD VFPLTRFKWL IEFSMDLEWC AVIRKLLNMF FEGAVGDSSS DSELSELCLL  720
HRAVRKNSKP MVEMLLRYAP KQQRHSLFRP DDAGPAGLTP LHIAAGKDGS EDVLDALTED  780
PTMVGIEAWR TSRDSTGFTP EDYARLRGHF SYIHLIQRKI NKKSTTEGHV VVNIPVSFSE  840
REQKEESKSG LMASALEVTH TNHQLQCKLC DHKLVYGTAR RSVAYRPAML SMVAIAAVCV  900
CVALLFKSCP EVLYVFQPFR WELLDYGTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-33134217184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00603PBMTransfer from AT2G47070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g29060
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8159480.0KC815948.1 Arabis alpina SQUAMOSA promoter binding protein-like protein 1 (SPL1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397898.10.0squamosa promoter-binding-like protein 1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLV4KN690.0V4KN69_EUTSA; Uncharacterized protein
STRINGXP_006397898.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30302764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]