PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g29470
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 195aa    MW: 21947.8 Da    PI: 10.1741
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g29470genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.3e-2061109355
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++aa+ +++g
  Tp4g29470  61 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFKTAEEAARAYDAAAIRIRG 109
                9*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.15960117IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-2360118IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-3360118IPR001471AP2/ERF domain
SMARTSM003802.7E-4060123IPR001471AP2/ERF domain
PRINTSPR003675.0E-126172IPR001471AP2/ERF domain
PfamPF008479.8E-1461109IPR001471AP2/ERF domain
CDDcd000185.27E-2261119No hitNo description
PRINTSPR003675.0E-128399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MCGGAIISDF IRSRPSFSES EPSKLGHDGS VSIKKRVLSA GGGKKEDGME KKRKRERKNL  60
YRGIRQRPWG KWAAEIRDPR KGVRVWLGTF KTAEEAARAY DAAAIRIRGR KAKLNFPNDS  120
TTNKEVAGAD LTNASQSHPP PQDKENQTAK LLSEELMAFE DYMRFYQIPY LDGQSSINDD  180
VPQLSLIGNL WSFQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2361117663ATERF1
3gcc_A3e-2361117663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13354KKRVLSAGGGKKEDGMEKKRKR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g29470
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0025352e-68AC002535.3 Arabidopsis thaliana chromosome 2 clone T30B22 map CIC06C03, complete sequence.
GenBankAY0746452e-68AY074645.1 Arabidopsis thaliana At2g47520/T30B22.18 mRNA, complete cds.
GenBankCP0026852e-68CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634579.11e-92PREDICTED: ethylene-responsive transcription factor ERF071
RefseqXP_013674805.11e-92ethylene-responsive transcription factor ERF071-like
SwissprotO222591e-66ERF71_ARATH; Ethylene-responsive transcription factor ERF071
TrEMBLA0A0D3C6Q82e-91A0A0D3C6Q8_BRAOL; Uncharacterized protein
STRINGBo4g198690.14e-92(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.11e-38ERF family protein
Publications ? help Back to Top
  1. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  2. Yao Y,Chen X,Wu AM
    ERF-VII members exhibit synergistic and separate roles in Arabidopsis.
    Plant Signal Behav, 2017. 12(6): p. e1329073
    [PMID:28537474]
  3. Eysholdt-Derzsó E,Sauter M
    Root Bending Is Antagonistically Affected by Hypoxia and ERF-Mediated Transcription via Auxin Signaling.
    Plant Physiol., 2017. 175(1): p. 412-423
    [PMID:28698356]
  4. Eysholdt-Derzsó E,Sauter M
    Hypoxia and the group VII ethylene response transcription factor HRE2 promote adventitious root elongation in Arabidopsis.
    Plant Biol (Stuttg), 2019. 21 Suppl 1: p. 103-108
    [PMID:29996004]