PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA10171
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRF
Protein Properties Length: 341aa    MW: 37145.9 Da    PI: 8.007
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA10171genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.82.2e-2495139145
                        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                d+epgrCrRtDGKkWRC +++++++k+CErH+hrgr+rsrk++e+
  Tp57577_TGAC_v2_mRNA10171  95 DPEPGRCRRTDGKKWRCAKEAYPDSKYCERHMHRGRNRSRKPVES 139
                                79****************************************986 PP
2QLQ62.79.8e-223267136
                        QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                               s+FT +Q+q+L++Q+l++Ky++a++PvPp+L+++iq
  Tp57577_TGAC_v2_mRNA10171 32 SPFTVSQWQELEHQALIFKYMVAGLPVPPDLVLPIQ 67
                               89*********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.7E-113268IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.1E-163367IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.6853368IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.01895139IPR014977WRC domain
PfamPF088796.9E-2196138IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MNSSNGGMMG FSKSSAAAAA TAAAAAGSAS SSPFTVSQWQ ELEHQALIFK YMVAGLPVPP  60
DLVLPIQTTA FHSNNFFHHP IPTLSYCSFY GKKVDPEPGR CRRTDGKKWR CAKEAYPDSK  120
YCERHMHRGR NRSRKPVESQ TMAQSSSTVT TVTGGGSIPG NFQNLPTTNS FGSLQNTTAS  180
GTDRADYHLD TIPYGIPSKE YRYLQGLKSE GGEHSFYAEG SGGGNKGLQM ESRLENAWPL  240
MSTRVSSYSA SKSSNDSMLQ SDYPQHSFLS SEYGSGQAVK EEGQPLRPFF NEWPKRRESW  300
SGLEDERSNQ TAFSTTQLSI SIPMSSSDFS GTSSQSPHDN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA10171
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352641e-100AC235264.1 Glycine max strain Williams 82 clone GM_WBb0041H18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013443735.10.0growth-regulating factor 4
TrEMBLA0A072TW620.0A0A072TW62_MEDTR; Growth-regulating factor
STRINGXP_004506549.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47812951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-42growth-regulating factor 5