PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA10314
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 317aa    MW: 34426 Da    PI: 7.033
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA10314genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027100122123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C+ C++ Fs++  L  H++ H
  Tp57577_TGAC_v2_mRNA10314 100 FSCSFCKRQFSTSQALGGHQNAH 122
                                89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.5E-697128No hitNo description
Gene3DG3DSA:3.30.160.603.9E-498126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.718100127IPR007087Zinc finger, C2H2
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MASESSSISA TSQDRGDSSN SKKVVVTKEI EQDQSSNSNS KNPVDFVKLL KDDSVPMANV  60
QEHNFFSPIQ VGSSSRFPIT NNEAKDENES EDKNSDSRSF SCSFCKRQFS TSQALGGHQN  120
AHKAERALEK QRKQRYDGGA LGLGQPLFSP YYSYPNTLFT PPYYNRALGT RMESMIQKPS  180
YINPRFTPLS IGYSHGALCL QEILSPSLMS LRNMGGGNSG IGNLSIGGAT TLKIEDGSKN  240
KLKIEDGSKN KISDILKFGE SSTNIATSSN SNSNIEKKNS VALTSTKDDI HQSKSNIEEE  300
TSNSDESCGL DLSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA10314
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU4439631e-163GU443963.1 Trifolium repens clone BAC 88b23 anthocyanidin reductase, serine/threonine kinase, and translation initiation factor-related genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013458912.11e-132myb-like protein A
TrEMBLA0A2K3NG530.0A0A2K3NG53_TRIPR; Zinc finger protein
STRINGXP_004499809.11e-125(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.13e-16C2H2 family protein