PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA10414

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

NAC

Protein Properties

Length: 273aa MW: 31311.4 Da PI: 5.9717

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA10414	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	154.7	4e-48	20	147	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyat.gkrknratksgyW 83 pGfrFhPtdee+v++yLk+k+++k +++++++ +diyk+ePwdLp +k+k+++ ewyfFs dkky + ++r+nrat++gyW Tp57577_TGAC_v2_mRNA10414 20 PGFRFHPTDEEIVCFYLKRKLTRKLPPCFDHLSVIDIYKFEPWDLPslSKLKTRDLEWYFFSGLDKKYGSsSNRTNRATDRGYW 103 8*******************************************5448888888********96488******* PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k+tgkd+ +++ ++ +vg+kktLv++ grap+ge+++Wvmheyr+ Tp57577_TGAC_v2_mRNA10414 104 KTTGKDRVIKN-GEVTVGMKKTLVYHLGRAPHGERSNWVMHEYRI 147 *****99.99***************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.42E-51	16	152	IPR003441	NAC domain
PROSITE profile	PS51005	48.152	18	165	IPR003441	NAC domain
Pfam	PF02365	5.2E-27	20	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
LAIAKLITPF LKELTMYQGP GFRFHPTDEE IVCFYLKRKL TRKLPPCFDH LSVIDIYKFE 60 PWDLPSLSKL KTRDLEWYFF SGLDKKYGSS SNRTNRATDR GYWKTTGKDR VIKNGEVTVG 120 MKKTLVYHLG RAPHGERSNW VMHEYRIIDQ SLPKHGFATF ESFVEGQVLP LPPARARDPD 180 FDEWLAVDNE YLDTNGYNAE DSDFDVSAYL TDLGDIKNVD EVINPFVDEY ISQPSPSTTT 240 TTIGITSTNN KPNYEQCFFT STPCFTKCYV IC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	5e-35	20	151	22	149	NAC domain-containing protein 19
3swm_B	5e-35	20	151	22	149	NAC domain-containing protein 19
3swm_C	5e-35	20	151	22	149	NAC domain-containing protein 19
3swm_D	5e-35	20	151	22	149	NAC domain-containing protein 19
3swp_A	5e-35	20	151	22	149	NAC domain-containing protein 19
3swp_B	5e-35	20	151	22	149	NAC domain-containing protein 19
3swp_C	5e-35	20	151	22	149	NAC domain-containing protein 19
3swp_D	5e-35	20	151	22	149	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250\|UniProtKB:Q949N0, ECO:0000269\|PubMed:19887540, ECO:0000269\|PubMed:21889048}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA10414

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269\|PubMed:17158162, ECO:0000269\|PubMed:19887540}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013443146.1	1e-86	NAC domain-containing protein 53
Swissprot	Q84K00	9e-62	NAC78_ARATH; NAC domain-containing protein 78
TrEMBL	A0A2K3P2Q0	1e-86	A0A2K3P2Q0_TRIPR; NAC domain-containing protein
TrEMBL	A0A2K3P8Q1	2e-88	A0A2K3P8Q1_TRIPR; NAC domain-containing protein (Fragment)
STRING	XP_004496133.1	2e-79	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5347	32	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04410.1	1e-63	NAC domain containing protein 2

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA10414

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liang M, et al. Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana. Traffic, 2015. 16(10): p. 1062-74 [PMID:26201836] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Gladman NP,Marshall RS,Lee KH,Vierstra RD The Proteasome Stress Regulon Is Controlled by a Pair of NAC Transcription Factors in Arabidopsis. Plant Cell, 2016. 28(6): p. 1279-96 [PMID:27194708] Tang Y,Zhao CY,Tan ST,Xue HW Arabidopsis Type II Phosphatidylinositol 4-Kinase PI4Kγ5 Regulates Auxin Biosynthesis and Leaf Margin Development through Interacting with Membrane-Bound Transcription Factor ANAC078. PLoS Genet., 2016. 12(8): p. e1006252 [PMID:27529511]