PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA10497

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

NAC

Protein Properties

Length: 178aa MW: 20482.3 Da PI: 9.4683

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA10497	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160	9.2e-50	20	153	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknratksgyW 83 pGfrFhPtdeelv +yL++kv++k+l++ e ik++diyk++PwdLp+k+++ +eke+yfF+ r +ky+++ r+nr+t sg+W Tp57577_TGAC_v2_mRNA10497 20 LPGFRFHPTDEELVGFYLRRKVDKKSLRI-ELIKQIDIYKYDPWDLPSKISSsmGEKECYFFCLRGRKYRNSIRPNRVTGSGFW 102 69*************************.89***********6554434889*********************** PP NAM 84 katgkdkevlsk......kgel..vglkktLvfykgrapkgektdWvmheyrl 128 katg dk+++s+ + + +glkk+Lv+y+g+a kg+ktdW+mhe+rl Tp57577_TGAC_v2_mRNA10497 103 KATGIDKPIYSSsvkessS--HdcIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 153 *******86655443..066*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.45E-51	18	159	IPR003441	NAC domain
PROSITE profile	PS51005	46.531	19	177	IPR003441	NAC domain
Pfam	PF02365	6.7E-25	21	153	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MDIVTKLDNF DDKKEDEIVL PGFRFHPTDE ELVGFYLRRK VDKKSLRIEL IKQIDIYKYD 60 PWDLPSKISS SMGEKECYFF CLRGRKYRNS IRPNRVTGSG FWKATGIDKP IYSSSVKESS 120 SHDCIGLKKS LVYYRGSAGK GTKTDWMMHE FRLPPKGKTS NNQLHNLSND VQEAVSD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	7e-45	15	153	10	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA10497

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003617382.1	1e-104	transcription factor JUNGBRUNNEN 1 isoform X1
Swissprot	Q9SK55	7e-78	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	G7K3B6	1e-103	G7K3B6_MEDTR; Putative transcription factor NAM family
STRING	AET00341	1e-104	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1013	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	3e-80	NAC domain containing protein 42

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA10497

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]