PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA10508
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 244aa    MW: 27776 Da    PI: 8.758
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA10508genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM86.74.3e-2728254128
                        NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk......kgel..vglkktLvfykgrapkgektdWvmheyrl 128
                                +eke+yfF+ r +ky+++ r+nr+t sg+Wkatg dk+++s+      +  +  +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  Tp57577_TGAC_v2_mRNA10508   2 GEKECYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDKPIYSSsvkessS--HdcIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 82 
                                5789*************************************86655443..066***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100532.381114IPR003441NAC domain
SuperFamilySSF1019418.37E-302113IPR003441NAC domain
PfamPF023654.8E-11682IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGEKECYFFC LRGRKYRNSI RPNRVTGSGF WKATGIDKPI YSSSVKESSS HDCIGLKKSL  60
VYYRGSAGKG TKTDWMMHEF RLPPKGKTSN NQLHNLSNDV QEAEVWTLCR IFKRIPSYKK  120
YTPNLKKDSE ETLAFTTNSS SSKTCSLESD NTKPYLTFTN SPLVDETKTF TNGHVDQRIN  180
PSFLSHHLGN VSHQAPTTLS QSSFWNDQNV VDEAFANENW DDLRSVVQFT FDPSKVYDCK  240
DFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-27112068171NO APICAL MERISTEM PROTEIN
1ut4_B3e-27112068171NO APICAL MERISTEM PROTEIN
1ut7_A3e-27112068171NO APICAL MERISTEM PROTEIN
1ut7_B3e-27112068171NO APICAL MERISTEM PROTEIN
3swm_A3e-27112071174NAC domain-containing protein 19
3swm_B3e-27112071174NAC domain-containing protein 19
3swm_C3e-27112071174NAC domain-containing protein 19
3swm_D3e-27112071174NAC domain-containing protein 19
3swp_A3e-27112071174NAC domain-containing protein 19
3swp_B3e-27112071174NAC domain-containing protein 19
3swp_C3e-27112071174NAC domain-containing protein 19
3swp_D3e-27112071174NAC domain-containing protein 19
4dul_A3e-27112068171NAC domain-containing protein 19
4dul_B3e-27112068171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA10508
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003617382.11e-139transcription factor JUNGBRUNNEN 1 isoform X1
RefseqXP_013454368.11e-139transcription factor JUNGBRUNNEN 1 isoform X2
SwissprotQ9SK559e-58NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A2K3NPJ81e-158A0A2K3NPJ8_TRIPR; NAC domain-containing protein
STRINGAET003411e-139(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.14e-60NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]