PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA10517
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 295aa    MW: 34082.5 Da    PI: 10.3846
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA10517genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.13.7e-1914105199
                                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                                f+k+ +++  ++++ l++p kf++++g++   + t+ l++++g +We++l   k++g+++++kGWkeF+k + L  g  ++Fk+
  Tp57577_TGAC_v2_mRNA10517  14 FIKIILTETLHQEK-LMMPIKFVKKYGES--LPNTIYLKTPNGAKWELNL--VKSDGKIWFEKGWKEFAKYHSLAHGHLLLFKY 92 
                                66777676666666.999********966..899****************..******************************** PP

                                -SSSEE..EEEEE-S CS
                         B3  85 dgrsefelvvkvfrk 99 
                                +++s+f   v++f+k
  Tp57577_TGAC_v2_mRNA10517  93 QRTSNF--QVHIFEK 105
                                998999..9999987 PP
2B371.11.4e-22180280199
                                EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvv 81 
                                f+ v+  s+v ++ +l++p kf ++h +++k+++ ++ ++ ++gr+W  ++++r +s r  + lt+GWkeF+k+n+Lk+gD + 
  Tp57577_TGAC_v2_mRNA10517 180 FVLVMGASYVKSRFLLTIPSKFGQTHfDLDKKRG-DIYFQVLNGRVWPARYSIRMCSTRlkFELTSGWKEFAKDNDLKVGDACN 262
                                6677889*******************97777666.9***************999999998899********************* PP

                                EEE-SSSEE..EEEEE-S CS
                         B3  82 Fkldgrsefelvvkvfrk 99 
                                F+l++++  +++v++frk
  Tp57577_TGAC_v2_mRNA10517 263 FELISNTILTFNVHIFRK 280
                                ****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.69E-2411106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-2412106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.80413106IPR003340B3 DNA binding domain
CDDcd100171.29E-1713103No hitNo description
SMARTSM010191.7E-1814106IPR003340B3 DNA binding domain
PfamPF023622.0E-1616105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.0E-25168286IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-24176282IPR015300DNA-binding pseudobarrel domain
CDDcd100171.06E-23178279No hitNo description
PfamPF023621.9E-21180280IPR003340B3 DNA binding domain
SMARTSM010192.2E-16180281IPR003340B3 DNA binding domain
PROSITE profilePS5086314.184180281IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MASEFPEVMK PIHFIKIILT ETLHQEKLMM PIKFVKKYGE SLPNTIYLKT PNGAKWELNL  60
VKSDGKIWFE KGWKEFAKYH SLAHGHLLLF KYQRTSNFQV HIFEKNALEI NYPFQRVATK  120
RVSNGQENKS TSGENCRVAQ KRKANSSFEL HHIDKKSKGK QVITTPIERA KSFKTCNPSF  180
VLVMGASYVK SRFLLTIPSK FGQTHFDLDK KRGDIYFQVL NGRVWPARYS IRMCSTRLKF  240
ELTSGWKEFA KDNDLKVGDA CNFELISNTI LTFNVHIFRK PDSDNTNCST LKLN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA10517
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024634792.11e-137B3 domain-containing transcription factor VRN1
TrEMBLG7J3B61e-148G7J3B6_MEDTR; Plant-specific B3-DNA-binding domain protein
STRINGAES730171e-149(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.14e-24B3 family protein