PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA10519
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 159aa    MW: 18196.6 Da    PI: 7.0302
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA10519genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3521.3e-16681561497
                                T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
                         B3  14 grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                                +   +p +f ++h  +++++++ ++ l+ ++g++W  k+ +   ++ +r  + ++GWkeF+k+n+Lk+gD ++F+l  + s  +
  Tp57577_TGAC_v2_mRNA10519  68 CFGHIPSEFGKRHllDLDNKQG-DIHLRLLNGKVWPAKYLIriANGLERyEMYSSGWKEFAKDNNLKVGDACTFELLPTsSIVT 150
                                5557**********96665454.999999**********6666666666467889********************986657777 PP

                                .EEEEE CS
                         B3  92 lvvkvf 97 
                                + v++f
  Tp57577_TGAC_v2_mRNA10519 151 FIVHIF 156
                                788887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.7E-523155IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.0E-1757157IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-1868157IPR015300DNA-binding pseudobarrel domain
PfamPF023628.0E-1571157IPR003340B3 DNA binding domain
CDDcd100173.02E-2172157No hitNo description
PROSITE profilePS5086312.2172158IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MIFNAEKSQQ QCNLREEQNR ERFSLTMTKA SCSVEDSASI SLRRNFLASI LLQRRNEEEA  60
NEAHDSACFG HIPSEFGKRH LLDLDNKQGD IHLRLLNGKV WPAKYLIRIA NGLERYEMYS  120
SGWKEFAKDN NLKVGDACTF ELLPTSSIVT FIVHIFKD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA10519
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024634792.13e-28B3 domain-containing transcription factor VRN1
TrEMBLA2Q2N53e-43A2Q2N5_MEDTR; Transcriptional factor B3
TrEMBLG7KVW75e-43G7KVW7_MEDTR; Transcriptional factor B3 family protein
STRINGAES788942e-41(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-09related to vernalization1 1