PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA10525

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Protein Properties

Length: 130aa MW: 15259.9 Da PI: 10.6603

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA10525	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	61.8	1.2e-19	16	93	16	99
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 l +p+kf++++g++ +k + l++++g++W+++l k++g+++++kGWkeF+k + L g ++Fk++++s f +v++f+k Tp57577_TGAC_v2_mRNA10525 16 LDVPRKFVKKYGKS--LPKAIYLKTPNGKKWKLNL--VKNDGKIWFEKGWKEFAKYHSLAHGHLLLFKYERTSHF--NVHIFEK 93 679******965..8999***********..******************************999999..9999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	14.508	1	94	IPR003340	B3 DNA binding domain
SMART	SM01019	2.5E-13	8	94	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	5.69E-23	14	94	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.8E-24	15	94	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	2.4E-17	16	93	IPR003340	B3 DNA binding domain
CDD	cd10017	3.31E-17	16	91	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence Send to blast
MKLWIDPTPL PQFDPLDVPR KFVKKYGKSL PKAIYLKTPN GKKWKLNLVK NDGKIWFEKG 60 WKEFAKYHSL AHGHLLLFKY ERTSHFNVHI FEKNALEIKY PSKRVEAKRV HYNGKGNKPP 120 INEANIFQT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA10525

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003622666.3	3e-50	B3 domain-containing transcription factor VRN1
TrEMBL	A2Q2N6	7e-51	A2Q2N6_MEDTR; Putative transcription factor B3-Domain family
STRING	AES78884	1e-49	(Medicago truncatula)
STRING	AES78894	1e-49	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF98	34	369

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49475.1	9e-22	B3 family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA10525