PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA10796

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

C3H

Protein Properties

Length: 342aa MW: 37370.7 Da PI: 9.7266

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA10796	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.8	2.5e-10	188	214	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt +Cr + +G C+y ++C+FaHg+ Tp57577_TGAC_v2_mRNA10796 188 FKTDICRAWEDSGNCRYNSKCQFAHGR 214 69***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	4.9E-15	184	218	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.16E-8	186	218	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.1E-7	187	214	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.009	187	215	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.5E-8	188	214	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MENAMSNVKK KVSKMRTLNE NVPPMQIELD DMRGRYLQSK TMSPGFQSYA ENIDFGSPPP 60 LARYFYAGSP LSGKSSDSFN SPIFGASKYR SLKMQQYSGG GTSLGNSSFG SRGRLPLSPL 120 SSIENFEKKS PPIYRTPVKG DEEVFVMDDI QVRPMSGVKS GRSSSSSSSG RGSSSGKGSS 180 SSSTKSLFKT DICRAWEDSG NCRYNSKCQF AHGREELHPS RLSMKRKSEG QMGRQSARQG 240 SWSFSPNSDP VHKPAEVAEA EHAVRRLPIS QPTSPEPHCS PASSNTISDW SPLDDGIEVV 300 LPNGSGRDPS REEVEAYILG TLNQRTTKWR LPVFDAICKV Q*

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MENAMSNVKK KVSKMRTLNE NVPPMQIELD DMRGRYLQSK TMSPGFQSYA ENIDFGSPPP  60
LARYFYAGSP LSGKSSDSFN SPIFGASKYR SLKMQQYSGG GTSLGNSSFG SRGRLPLSPL  120
SSIENFEKKS PPIYRTPVKG DEEVFVMDDI QVRPMSGVKS GRSSSSSSSG RGSSSGKGSS  180
SSSTKSLFKT DICRAWEDSG NCRYNSKCQF AHGREELHPS RLSMKRKSEG QMGRQSARQG  240
SWSFSPNSDP VHKPAEVAEA EHAVRRLPIS QPTSPEPHCS PASSNTISDW SPLDDGIEVV  300
LPNGSGRDPS REEVEAYILG TLNQRTTKWR LPVFDAICKV Q*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA10796

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004504769.1	1e-143	mRNA decay activator protein ZFP36L2-like
Refseq	XP_004504770.1	1e-143	mRNA decay activator protein ZFP36L2-like
TrEMBL	A0A2K3P973	0.0	A0A2K3P973_TRIPR; Zinc finger C-x8-C-x5-C-x3-H type protein
STRING	XP_004504769.1	1e-143	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11780	14	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	8e-07	C3H family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA10796