PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA10971

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

LBD

Protein Properties

Length: 183aa MW: 20327.3 Da PI: 7.9992

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA10971	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.3	3e-39	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +CaaCk+l+r+C ++C++apyf +++ kkfa vhk+FGasnv+k+l ++pe++red+++sl+yeAear+rdPvyG++g i lq Tp57577_TGAC_v2_mRNA10971 14 SCAACKLLKRRCIPNCIFAPYFHSDECKKFAKVHKVFGASNVSKILIEVPEKQREDTVNSLAYEAEARLRDPVYGCIGSIALLQ 97 6********************************************************************************* PP DUF260 85 qqleqlkaelallkee 100 +++++l+++la +k++ Tp57577_TGAC_v2_mRNA10971 98 RKMMELQHDLAIAKDR 113 ********999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.133	13	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.8E-39	14	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MKGMKGYEPR SSSSCAACKL LKRRCIPNCI FAPYFHSDEC KKFAKVHKVF GASNVSKILI 60 EVPEKQREDT VNSLAYEAEA RLRDPVYGCI GSIALLQRKM MELQHDLAIA KDRLARCRAV 120 TAATTVATTP FVDSLHSHVS LPPFPEFYTS SDLNDIFCHG SSSQLSGQNE TVDDFNQIPY 180 IF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-44	9	116	6	113	LOB family transfactor Ramosa2.1
5ly0_B	2e-44	9	116	6	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA10971

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CR378661	1e-179	CR378661.1 M.truncatula DNA sequence from clone XX-10B15, complete sequence.
GenBank	CR937029	1e-179	CR937029.1 M.truncatula DNA sequence from clone MTH2-105B15 on chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017417048.1	1e-106	PREDICTED: LOB domain-containing protein 21-like
Swissprot	Q9SRL8	3e-61	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A2K3NPU0	1e-132	A0A2K3NPU0_TRIPR; LOB domain-containing protein 21-like
STRING	GLYMA11G35500.1	1e-105	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5944	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	1e-62	LOB domain-containing protein 21

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA10971

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]