PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA10979
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bZIP
Protein Properties Length: 279aa    MW: 30778.8 Da    PI: 4.3875
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA10979genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.52.6e-12145189347
                                XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 
                                 +k+++r ++NR AA +sR+RKk ++++Le+k+  +e+e ++L  
  Tp57577_TGAC_v2_mRNA10979 145 VSKKQIRQMRNRDAAVKSRERKKTYVKNLETKSRYFEGECRRLEH 189
                                579************************************987753 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.1E-13136206No hitNo description
SMARTSM003382.0E-5143207IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.634145188IPR004827Basic-leucine zipper domain
PfamPF001705.5E-10146189IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.06E-10147205No hitNo description
CDDcd147041.79E-15148199No hitNo description
PROSITE patternPS000360151165IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0030968Biological Processendoplasmic reticulum unfolded protein response
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MTIFKQKICC SVSSKVGVGV GGGEHMVNES TNLPDFEQVA DFLQEDVINP PVSIGDTPSP  60
IPALSQIENL LMTDSDEGIA SPEESDYDKL LAEILIEPLP ESEEGSVSVV PSDKGGVDPS  120
TPEEVRSDKD GVDPSTPEEV SPEPVSKKQI RQMRNRDAAV KSRERKKTYV KNLETKSRYF  180
EGECRRLEHL LQCCYAENHA LRFCLQSRSA FGAPMTMQES AVLLLESLLL GSLLWFMGIM  240
WQLTPSTINF QHVDRITTEA PREEPSPSFT CLAPKTCE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00019PBMTransfer from AT1G42990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA10979
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1388261e-100BT138826.1 Lotus japonicus clone JCVI-FLLj-17J20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467378.14e-79bZIP transcription factor 60
TrEMBLA0A2Z6MPL31e-113A0A2Z6MPL3_TRISU; Uncharacterized protein
STRINGXP_004514723.19e-77(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120093032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G42990.14e-15basic region/leucine zipper motif 60