PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11007
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WOX
Protein Properties Length: 241aa    MW: 26415.4 Da    PI: 8.4653
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11007genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.33.5e-153090257
                               T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               r+R+t+++eq+ +Le+ F++   +p ++e  ++ k l     + +++V++WFqNrR + ++
  Tp57577_TGAC_v2_mRNA11007 30 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLekfgPVGDANVFYWFQNRRSRSRR 90
                               89*****************99****************99999****************997 PP
2Wus_type_Homeobox106.51.6e-342992265
          Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                               +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G ++d+NVfyWFQNr++R+r++q
  Tp57577_TGAC_v2_mRNA11007 29 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGPVGDANVFYWFQNRRSRSRRRQ 92
                               689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.42E-142497IPR009057Homeodomain-like
PROSITE profilePS5007111.1752691IPR001356Homeobox domain
SMARTSM003891.1E-62895IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.4E-92897IPR009057Homeodomain-like
PfamPF000466.6E-133090IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MEDQEQKQHA QSQSSNTNNP NNIERSETVR SRWTPKPEQI LILESIFNSG MVNPPKDETV  60
RIRKLLEKFG PVGDANVFYW FQNRRSRSRR RQRQMQAASQ LSGGSVNPYH QYQCSTNSAN  120
TLSLGAAIGF GGFTNFTMNS SSCNSSYNNN FSGSSSSCGV GVGLGIGFGV NNVSDVIIVF  180
INGVPTEVPR GAIDMKTMFG EDVMLIHSSG VSVPTNEFGF LMQSLQNGES YYLVSKQTQP  240
*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150449e-49AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004489665.16e-93WUSCHEL-related homeobox 11-like
SwissprotQ6X7J34e-64WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBLA0A2K3MR541e-134A0A2K3MR54_TRIPR; WUSCHEL-related homeobox 11-like protein
STRINGXP_004489665.12e-92(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58983152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17810.22e-33WUSCHEL related homeobox 12
Publications ? help Back to Top
  1. Hu X,Xu L
    Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis.
    Plant Physiol., 2016. 172(4): p. 2363-2373
    [PMID:27784768]
  2. Sheng L, et al.
    Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture.
    Development, 2017. 144(17): p. 3126-3133
    [PMID:28743799]
  3. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]
  4. Baesso B, et al.
    Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana.
    Plant Biol (Stuttg), 2018. 20(3): p. 426-432
    [PMID:29450949]