PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11016
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NF-YC
Protein Properties Length: 117aa    MW: 13351.3 Da    PI: 4.7306
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11016genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC55.61.2e-171394383
                      NF-YC  3 ksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav 83
                                +fwe+q   i +++d+k  ++  +r+kk++k   dvk i  ++ v+++k celfi ++t+rs  + +e+ r++++ +d+ +++
  Tp57577_TGAC_v2_mRNA11016 13 DKFWEEQfkkISETADLKS-HICTSRVKKVMKEVADVK-IPNQTCVFMAKVCELFIKDITMRSMFKMKEAGRTSIEINDVVDTL 94
                               57*****555555666665.5889*************6.8999************************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001252.0E-71790IPR007125Histone H2A/H2B/H3
Gene3DG3DSA:1.10.20.101.8E-113090IPR009072Histone-fold
SuperFamilySSF471131.8E-103497IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MDPNRKKNAE LVDKFWEEQF KKISETADLK SHICTSRVKK VMKEVADVKI PNQTCVFMAK  60
VCELFIKDIT MRSMFKMKEA GRTSIEINDV VDTLGDIDSE TKIEDDKAEI STNEDD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11016
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3M5564e-76A0A2K3M556_TRIPR; Heme activated protein 5c (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.38e-15nuclear factor Y, subunit C3