PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11050
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 896aa    MW: 100061 Da    PI: 8.1512
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11050genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.7e-0885110127
                                --S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                ykt+ C +f+  G C+ Gd+C+FaHg+
  Tp57577_TGAC_v2_mRNA11050  85 YKTRTCTRFSF-GNCRNGDNCNFAHGE 110
                                9*********9.*************96 PP
2zf-CCCH25.22.9e-08135159125
                                --S---SGGGGTS--TTTTT-SS-S CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                                +k++lC+ f+ + +C+yG++C+F H
  Tp57577_TGAC_v2_mRNA11050 135 QKMKLCKKFYNGEQCPYGEKCSFLH 159
                                5999*******66************ PP
3zf-CCCH41.22.7e-13211237127
                                --S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                +kt+lC  ++ tG C++Gd C+FaHg+
  Tp57577_TGAC_v2_mRNA11050 211 WKTKLCTKWQNTGSCPFGDDCHFAHGE 237
                                8************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.63E-882115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-1482117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.30984111IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-584110IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-585110IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6134161IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4134161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.784134162IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-6135159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-8136160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-14206237IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-9209237IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.957210238IPR000571Zinc finger, CCCH-type
SMARTSM003569.2E-7210237IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-10211237IPR000571Zinc finger, CCCH-type
PfamPF092965.6E-9558675IPR015375NADH pyrophosphatase-like, N-terminal
SuperFamilySSF558111.76E-38662832IPR015797NUDIX hydrolase domain-like
Gene3DG3DSA:3.90.79.106.7E-43674829IPR015797NUDIX hydrolase domain-like
PfamPF092974.3E-8678710IPR015376Zinc ribbon, NADH pyrophosphatase
PROSITE profilePS5146216.259711844IPR000086NUDIX hydrolase domain
CDDcd034294.35E-56716888No hitNo description
PfamPF002936.7E-16717831IPR000086NUDIX hydrolase domain
PROSITE patternPS008930747768IPR020084NUDIX hydrolase, conserved site
Gene3DG3DSA:3.90.79.106.7E-43869887IPR015797NUDIX hydrolase domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016787Molecular Functionhydrolase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 896 aa     Download sequence    Send to blast
MAHPHHIPTS RMSPPRFATN SDAIEVGPQF PMINDRTEQH SGFEQQSFKR ARMIGNNRSD  60
AFPCPPPRVM QPPPQLNRGT GHIFYKTRTC TRFSFGNCRN GDNCNFAHGE EELRQPPPNW  120
QDYVGNWDDD QKIIQKMKLC KKFYNGEQCP YGEKCSFLHE DPAKFRADSW KSRECSAISI  180
GTVGSPKSFG DGSDNLEGNS GVTKQPRGTY WKTKLCTKWQ NTGSCPFGDD CHFAHGEAGN  240
TIGFGFLSYN STYWLFFNSD LQAPGGGIEA EAAVAIANTT KAPVPASPKA LSVSVANVEP  300
VALPASLPVA MEVEMDEKAK KILSRSRLKN KKLFGLYADW INDIGPLPNP NYPRIVVALV  360
MLLMLLFPRL ITFMGEKVMS LGIFMFLERL IKLLRASRVL DSRLKKGLKI YEGTKNFKLG  420
KQSLSQDFFF FMLSITRLDQ PNQLTFFLRL TNNLFGLIID PSFPVAPFLV SSLKFFLISS  480
SKILFPKQIH TLKPFFFFCK FPPSVTVTMS INLQFHAFAG NPLNSIPGNP LSHSAALESL  540
NARILGNDHS SPSPNFKVLP FRNGRPLVSS TASSGEFLPI WHLGWVSLDD LRGIFENSGA  600
PLNGDSLIYL GSSAEDDAVY WAIDVSAKVP ELGTNMDMEL RFVELRTLMV ATDWENLKAM  660
ENLAIAGNAK ALLEWHNTSQ FCGHCGEKTV SKEAGRRKQC LNDSCKKRIY PRVDQVVIML  720
VIDRENDHVL LGTRPKFISQ LWSCLSGFTE PGESLEEAVR RETWEESGIE VGEVVYHSSQ  780
PWPVGPNSIP CQLMVGFFAY AKSREITVDK KELEDARWFS REDIREALTL ADYKKGQKTA  840
ASKVEQMCKG VEKSRSMAAD FNVESGELAP IFVPGPFAIA HHLISSWAFS DQNVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6o3p_A5e-43664888145335Peroxisomal NADH pyrophosphatase NUDT12
6o3p_B5e-43664888145335Peroxisomal NADH pyrophosphatase NUDT12
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11050
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF454422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.16e-56C3H family protein