PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11096
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 294aa    MW: 33665.8 Da    PI: 6.6762
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11096genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding409.3e-131569148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48
                               +g W++eEd +l +++ ++G  +W++++ + g       + R +k+c++rw +yl
  Tp57577_TGAC_v2_mRNA11096 15 KGLWSPEEDNKLRNYILKYGHSCWTSVPIKAGvkieypgLQRNGKSCRLRWINYL 69
                               678**************************************************97 PP
2Myb_DNA-binding44.92.7e-1477120348
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                  ++ E++ +  ++++lG++ W+ Ia+ ++ gRt++++k++w++yl
  Tp57577_TGAC_v2_mRNA11096  77 MLSKHEEDTIMTLHHMLGNK-WSQIAQQLP-GRTDNEIKNYWHSYL 120
                                56899***************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-18971IPR009057Homeodomain-like
PROSITE profilePS5129412.271069IPR017930Myb domain
SuperFamilySSF466891.2E-2513116IPR009057Homeodomain-like
SMARTSM007171.6E-91471IPR001005SANT/Myb domain
PfamPF002499.9E-121569IPR001005SANT/Myb domain
CDDcd001678.46E-81869No hitNo description
PROSITE profilePS5129423.06270124IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-2372124IPR009057Homeodomain-like
SMARTSM007173.5E-1174122IPR001005SANT/Myb domain
PfamPF002494.6E-1377120IPR001005SANT/Myb domain
CDDcd001671.64E-879120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0010018Biological Processfar-red light signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGIQVAEKAK SKYRKGLWSP EEDNKLRNYI LKYGHSCWTS VPIKAGVKIE YPGLQRNGKS  60
CRLRWINYLR PGLKRGMLSK HEEDTIMTLH HMLGNKWSQI AQQLPGRTDN EIKNYWHSYL  120
KKKVVNAKEI IESHNQIQYA SSSSDTMDSL LSTKKCAIQD PNNYMLLENI DKSTTAATHS  180
DQSISQNYNT ANEVCQSSLP KLLFAEWLSL DHVNGGKSLN SDDSMVLGNG FDQNSIFQEN  240
VMQMQEGQFG EEYHDSLIQN LENEVYYSQL QISNQVDENE LVHYMNNDGR YVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-22151247108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11096
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003619518.11e-170transcription factor LAF1 isoform X1
SwissprotQ9M0K45e-63LAF1_ARATH; Transcription factor LAF1
TrEMBLG7KMD31e-169G7KMD3_MEDTR; Myb transcription factor
STRINGAES757361e-170(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38303161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.15e-65myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]