PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11110
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HSF
Protein Properties Length: 274aa    MW: 30079.5 Da    PI: 6.5337
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11110genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.14.5e-36281182101
                                HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS
               HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 
                                Fl+k+y+++ed++++++isw+e+g++f+v++++ fa+++Lpk+Fkh+nf+SFvRQLn+YgF+kv  ++         weF+++ 
  Tp57577_TGAC_v2_mRNA11110  28 FLTKTYNLVEDKSIDDVISWNEDGSTFIVWNPTVFASNLLPKHFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDC 102
                                9*****************************************************************99.........******* PP

                                XXXXXXXXXXXXXXXX CS
               HSF_DNA-bind  86 Fkkgkkellekikrkk 101
                                F++g+k+ll++i+r+k
  Tp57577_TGAC_v2_mRNA11110 103 FRRGEKRLLCEIQRRK 118
                                **************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.5E-5524117IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.99E-3425117IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.6E-3725117IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.2E-3228117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-202851IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-206678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-207991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MAPPVENNAE STTTTPILES QRSIPTPFLT KTYNLVEDKS IDDVISWNED GSTFIVWNPT  60
VFASNLLPKH FKHNNFSSFV RQLNTYGFRK VVPDRWEFSN DCFRRGEKRL LCEIQRRKIC  120
SPAVSPSPAT VSVSAAATVE TTTTATVAVP SPMPITVIPM AMPMVSPSNS GEEQVISSSS  180
SPPRAPAELL DENERLRKEN VLLNKELAEM RLLCNNIYTL MSSYANNNSN GNNQSDGGAQ  240
GSRESGMTAV KPLDLLPAEL KRSSXXXXXX ALK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-242811729129Heat shock factor protein 1
5d5v_B6e-242811729129Heat shock factor protein 1
5d5v_D6e-242811729129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11110
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF7678441e-106JF767844.1 Trifolium alexandrinum microsatellite TaSSR347 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004515711.11e-141heat stress transcription factor B-2a
SwissprotQ9SCW42e-83HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A2K3MNZ50.0A0A2K3MNZ5_TRIPR; Heat stress transcription factor b-2b-like protein
STRINGXP_004515711.11e-140(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-75heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]