PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11116
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 288aa    MW: 32821.7 Da    PI: 6.5117
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11116genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.31.7e-181966148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               rg+WT+eEde+lv+++++ G g+W+t ++  g+ R++k+c++rw +yl
  Tp57577_TGAC_v2_mRNA11116 19 RGAWTPEEDEILVEYINKNGHGSWRTLPKLAGLLRCGKSCRLRWINYL 66
                               89******************************99************97 PP
2Myb_DNA-binding54.92e-1772115146
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                rg++Tt+E+ ++++ +++lG++ W++Ia+ ++ gRt++++k++w++
  Tp57577_TGAC_v2_mRNA11116  72 RGPFTTDEENRIIHFHTMLGNR-WAAIASQIP-GRTDNEIKNYWNT 115
                                89********************.*********.***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.9E-251069IPR009057Homeodomain-like
PROSITE profilePS5129417.7591466IPR017930Myb domain
SuperFamilySSF466896.24E-3017113IPR009057Homeodomain-like
SMARTSM007171.3E-131868IPR001005SANT/Myb domain
PfamPF002492.4E-161966IPR001005SANT/Myb domain
CDDcd001677.13E-102166No hitNo description
PROSITE profilePS5129424.92167121IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.4E-2570121IPR009057Homeodomain-like
SMARTSM007172.0E-1471119IPR001005SANT/Myb domain
PfamPF002492.9E-1572116IPR001005SANT/Myb domain
CDDcd001673.11E-974115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MVKIKMGKTP CCDKHEVKRG AWTPEEDEIL VEYINKNGHG SWRTLPKLAG LLRCGKSCRL  60
RWINYLRPDI KRGPFTTDEE NRIIHFHTML GNRWAAIASQ IPGRTDNEIK NYWNTQLKKR  120
VTQSGNSLAT QQYHYLSSDH IVVKPESPSK QHTMQWESDR IEAEAKLPTS ETHSDYFLQL  180
WNSEVGKSFR MIKGKEIMCQ STVSEASSSS KLESCSNNDS SALVNKSQEE QGSDYKPKLE  240
DGITGSESGY YEFLDSYDSA LNRLLDDEIG FSEQNESFLN TLFGRCD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26191217108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11116
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027359122.11e-139transcription factor MYB41-like
SwissprotQ9M2D93e-91MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A2K3L2Y61e-178A0A2K3L2Y6_TRIPR; R2R3-MYB transcription factor
STRINGXP_007143400.11e-124(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.13e-88myb domain protein 17