PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11169
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 134aa    MW: 15542.2 Da    PI: 4.7333
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11169genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.3e-09101129129
                                CHHHHHHHHHHHHHHHHHHHHHHHCTSCC CS
                        HLH   1 rrrahnerErrRRdriNsafeeLrellPk 29 
                                +r++h  +Er+RR+++N+ ++ Lr+l+P 
  Tp57577_TGAC_v2_mRNA11169 101 QRVSHITVERNRRKQMNEHLSVLRSLMPC 129
                                79**************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.34E-799134No hitNo description
Gene3DG3DSA:4.10.280.104.0E-8100130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-8100131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.312100134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-7101129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MDENLYNIFE DRTEFGNSNS FGVPDDDLFA ILESLEDFTD FPLIKESEAV TPKENEDSST  60
SRLVSQKSTS SLQDSETEHK SKRQKLTPTL LEEQINNVGQ QRVSHITVER NRRKQMNEHL  120
SVLRSLMPCF YVKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11169
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT9630792e-94CT963079.4 M.truncatula DNA sequence from clone MTH2-64N20 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003602194.16e-71transcription factor SPEECHLESS
TrEMBLA0A2K3N0223e-87A0A2K3N022_TRIPR; Transcription factor SPEECHLESS
STRINGAES724452e-70(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36863463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.12e-23bHLH family protein