PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11315
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 102aa    MW: 11691.1 Da    PI: 8.0222
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11315genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.95.5e-14239645
                               HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
            Myb_DNA-binding  6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                                +E  l+++++  lG++ W+ Ia++++ gRt++++k++w+
  Tp57577_TGAC_v2_mRNA11315  2 HQEAALIIELHSILGNR-WAQIAKHLP-GRTDNEVKNFWN 39
                               68999************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.0E-8144IPR001005SANT/Myb domain
CDDcd001672.40E-11139No hitNo description
PROSITE profilePS5129421.916146IPR017930Myb domain
PfamPF002491.6E-12140IPR001005SANT/Myb domain
SuperFamilySSF466891.3E-12250IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.6E-19242IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
SHQEAALIIE LHSILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLFSHD FIPSFTTFSN  60
IHTPYNIGSM DSFFPNPNVI LNINHHHQDQ LYLPTSSPNQ QG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-1414663108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11315
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444365.18e-51transcription factor MYB26
TrEMBLA0A072TLY22e-49A0A072TLY2_MEDTR; Myb-like DNA-binding domain protein
STRINGGLYMA07G01050.23e-46(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30143168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.23e-26myb domain protein 26