PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA11384

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

M-type_MADS

Protein Properties

Length: 107aa MW: 12252.2 Da PI: 9.9208

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA11384	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	34	3.8e-11	3	38	12	47
HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstgkly 47 f +Rr ++KKA+ + +LC+++va ++fs + k++ Tp57577_TGAC_v2_mRNA11384 3 AFLNRRSSVFKKASDIFTLCGTNVAFVVFSLKEKIF 38 699***************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	12.601	1	44	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.22E-14	3	59	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.7E-10	4	40	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.3E-5	6	21	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.3E-5	21	42	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 107 aa Download sequence Send to blast
QPAFLNRRSS VFKKASDIFT LCGTNVAFVV FSLKEKIFLF GHPNVNTVID RYLSRDPPQN 60 KGIMPFIEAQ RNTNMLELNS QMSHINNALE IERRCRDELS FTLKMT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA11384

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013469942.1	9e-38	agamous-like MADS-box protein AGL62
Refseq	XP_024634594.1	6e-39	agamous-like MADS-box protein AGL62
TrEMBL	A0A2Z6NQ74	3e-37	A0A2Z6NQ74_TRISU; Uncharacterized protein
STRING	AES62809	3e-36	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF128	33	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	9e-25	AGAMOUS-like 62

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA11384