PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1140
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 443aa    MW: 50995.6 Da    PI: 8.6096
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1140genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.26.1e-16221266148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               +g WT++E   lv++v  +G + W+ Ia+ m+ gR +kqc++rw+++l
  Tp57577_TGAC_v2_mRNA1140 221 KGQWTADETSNLVELVDTFGYD-WSMIAKFMN-GRNGKQCRERWYNHL 266
                               799*******************.*********.*************97 PP
2Myb_DNA-binding62.31e-19313354346
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               +W++eE+++l++a+k+lG++ W++Iar+++ gRt++ +k++w++
  Tp57577_TGAC_v2_mRNA1140 313 SWSEEEEKILIEAHKRLGNK-WTKIARMLP-GRTDNAIKNHWNT 354
                               7*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-19214270IPR009057Homeodomain-like
SuperFamilySSF466892.3E-16214270IPR009057Homeodomain-like
PROSITE profilePS5129424.852216270IPR017930Myb domain
SMARTSM007172.7E-14220268IPR001005SANT/Myb domain
PfamPF002493.4E-14221266IPR001005SANT/Myb domain
CDDcd001671.24E-11224266No hitNo description
PROSITE profilePS500904.646284305IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.0E-13287318IPR009057Homeodomain-like
SuperFamilySSF466896.42E-27287363IPR009057Homeodomain-like
PROSITE profilePS5129427.317306360IPR017930Myb domain
SMARTSM007171.3E-17310358IPR001005SANT/Myb domain
PfamPF002498.7E-18312354IPR001005SANT/Myb domain
CDDcd001676.58E-14313354No hitNo description
Gene3DG3DSA:1.10.10.607.9E-20319357IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MELDLSFEKK IPCLFGDYPK YSSMKLDIPT IVSSKFNSPF SYSPSHCTTF LNQNYCNPFK  60
EHHLTGSNHH SSFPTVFPSS IGPITMIPTP SYKATHNNGS HRESTGAQNP MMFESNNNKM  120
KTMHDRLNTS KGVWDLSKKN IFQYGETSQP QVSQSLPASP VYDADPSPSI KRKHQGDLSS  180
NGEIENKPQE NDPGLVLSDQ KRQTMSQKNS EIRHKDPNTI KGQWTADETS NLVELVDTFG  240
YDWSMIAKFM NGRNGKQCRE RWYNHLQPKI KVIFILPISL VFTVTPKFMN GRNGKQCRER  300
WYNHLQPKIK KASWSEEEEK ILIEAHKRLG NKWTKIARML PGRTDNAIKN HWNTAIRTQS  360
RKYKRNGWSS SKNSILQKYI NEITSTKEVE KDHDEELVTE EDEQPGGYME VMCNNGENGM  420
EFFVEVPMKE EMDFMEMICK NP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-392213576156MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-392213576156MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA1140
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013456909.11e-116transcription factor MYB98
TrEMBLA2Q4M11e-136A2Q4M1_MEDTR; Homeodomain-related
STRINGAES786301e-137(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.11e-36myb domain protein 119