PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11457
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 185aa    MW: 21755 Da    PI: 5.5216
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11457genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY727.8e-231575259
                               --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
                               dDg++WrKYGqK+++++++ rsYYrCt+     C++ k+v+r++e+p +  +tY g+H+++
  Tp57577_TGAC_v2_mRNA11457 15 DDGHAWRKYGQKKITNAKYFRSYYRCTHMddqYCEAIKHVQRTQENPPLYRTTYYGHHTCT 75
                               8***************************98889**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.0E-24975IPR003657WRKY domain
PROSITE profilePS5081119.382977IPR003657WRKY domain
SuperFamilySSF1182902.35E-22975IPR003657WRKY domain
SMARTSM007743.0E-311476IPR003657WRKY domain
PfamPF031065.8E-231574IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
SISPTWEKTT SILIDDGHAW RKYGQKKITN AKYFRSYYRC THMDDQYCEA IKHVQRTQEN  60
PPLYRTTYYG HHTCTSSFHS NINLESNLSS DDSSILLSFD KNILNKQEYS FPQPPSPPSP  120
RLTSTKEEFK EEIHDDYFAQ NQLFSPQNIL SCDFEVYFDY LRHVTMITSS ESFEFENVYD  180
QFGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-201474868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11457
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003596301.16e-99probable WRKY transcription factor 63
TrEMBLG7IR311e-97G7IR31_MEDTR; Putative transcription factor WRKY family
STRINGAES665522e-98(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126381134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.12e-22WRKY DNA-binding protein 38