PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA11521

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Protein Properties

Length: 206aa MW: 23859.6 Da PI: 10.1111

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA11521	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57	3.6e-18	84	175	1	94
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 ff +++ + ++++l +p+kfa++h + e++ +tl + r+W+v l+ + + ++++l++GW++F + +Lk gD++vF Tp57577_TGAC_v2_mRNA11521 84 FFACILQKTYIERDLLGIPNKFAKTHlQ--RMEGRNVTLFVDKDRTWNVDLKRNSNNKQFILSGGWSKFRDHYKLKFGDVCVFI 165 666777889999*********99943..456678999999*****88888888*********************** PP E-SSSEE..EE CS B3 84 ldgrsefelvv 94 l++ +++ + Tp57577_TGAC_v2_mRNA11521 166 LNK-CKGTVSF 175 976.5554443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd10017	1.34E-18	70	181	No hit	No description
Gene3D	G3DSA:2.40.330.10	2.4E-20	77	181	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.39E-19	78	181	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	2.3E-15	84	176	IPR003340	B3 DNA binding domain
SMART	SM01019	2.0E-14	84	183	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.24	84	183	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MEDPSSSRFK RTKSPSPSSR ICKKMKINAK ESKHATTIVR THGWTCIYGE FLKFLAGSSC 60 DNLKKRGYDL YEKVMTNFDS DKNFFACILQ KTYIERDLLG IPNKFAKTHL QRMEGRNVTL 120 FVDKDRTWNV DLKRNSNNKQ FILSGGWSKF RDHYKLKFGD VCVFILNKCK GTVSFQVVIF 180 SLEKDMNTSY FEGNYLIYLV SIIFA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA11521

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024636868.1	1e-70	B3 domain-containing protein REM8
TrEMBL	A0A396IHE6	3e-69	A0A396IHE6_MEDTR; Putative transcription factor B3-Domain family
STRING	AES91879	3e-68	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14023	10	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31640.1	6e-09	B3 family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA11521