PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11522
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 451aa    MW: 51965.9 Da    PI: 7.9122
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11522genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.93.7e-182102991098
                                HHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                         B3  10 vlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                                v     rl++p +f +e++ ++  ++  t+++  + r+W+vkli++ +++ + +++GWk+F ++++L+ gD++ F++++r+  +
  Tp57577_TGAC_v2_mRNA11522 210 VEGGkIRLRIPTQFSKEYM-NELLQMNATIRSvGEDRTWDVKLIFDERKRNFEMRTGWKSFSQEHNLQIGDVCKFEMTQRRPLS 292
                                44333789**********6.5578899999996777****************************************99888887 PP

                                .EEEEE- CS
                         B3  92 lvvkvfr 98 
                                +++++ r
  Tp57577_TGAC_v2_mRNA11522 293 FTITINR 299
                                7887766 PP
2B339.88e-133634411091
                                HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                         B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                                v+++ +lv+p +f+++h++++ +s  + l+     +W v+++++++ +  ++tkGW eFv++ ++k gD+++F+ ++ ++  
  Tp57577_TGAC_v2_mRNA11522 363 VTSLFMLVVPSEFLKKHNISSGNS--VALKV-GEGTWFVEVSFNQHLDYGWFTKGWPEFVRECKVKIGDTCLFEIVDLENHV 441
                                678899***********9886665..55555.5579**************************************66435443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-1113105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-1115105IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.01117106IPR003340B3 DNA binding domain
CDDcd100176.30E-731104No hitNo description
Gene3DG3DSA:2.40.330.101.1E-17194299IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-18196298IPR015300DNA-binding pseudobarrel domain
CDDcd100175.17E-19199299No hitNo description
SMARTSM010191.7E-12201301IPR003340B3 DNA binding domain
PROSITE profilePS5086312.985202301IPR003340B3 DNA binding domain
PfamPF023624.6E-16213299IPR003340B3 DNA binding domain
PROSITE profilePS5086310.01354450IPR003340B3 DNA binding domain
SMARTSM010192.3E-7358445IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.5E-15359447IPR015300DNA-binding pseudobarrel domain
CDDcd100178.50E-14359447No hitNo description
SuperFamilySSF1019362.75E-13362445IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-10363440IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MSFENYGRGS DAKGIHFYQT IQLPQLQDQN LMIPRNFVER YWKDVSNPIS LKLPNGSDCK  60
MCWVQQGEDI WIQNWKRFAR SLRCGDLLVF QYKGGSDFHV IIFDDSKLEI DYSSMRYNDD  120
QEEEESENTE QPLKKKKINS NGSVVTPQGT SIDRRKINTN AIQQKVSEAN SYSGGMGKTV  180
KKCAKTKDGN ERSCTSSTPS FTLTLPRSYV EGGKIRLRIP TQFSKEYMNE LLQMNATIRS  240
VGEDRTWDVK LIFDERKRNF EMRTGWKSFS QEHNLQIGDV CKFEMTQRRP LSFTITINRA  300
TKEPCPEQFQ ENQRVHEKSE TTPVKDMEYV GNFEEGLLRS CAKTHGLKNS ESPNLHNTFK  360
VFVTSLFMLV VPSEFLKKHN ISSGNSVALK VGEGTWFVEV SFNQHLDYGW FTKGWPEFVR  420
ECKVKIGDTC LFEIVDLENH VFKVSVILDV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11522
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024630376.11e-121B3 domain-containing protein REM16
TrEMBLA0A072U9K20.0A0A072U9K2_MEDTR; B3 DNA-binding domain protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11472624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-16B3 family protein