PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11526
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 333aa    MW: 38540.9 Da    PI: 8.3614
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11526genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.21.3e-17211301193
                                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                                ff+  +++ + ++++l +p +fa++h ++  e++++tl   + r+W+v l+ + + ++++l++GW++F +  +Lk gD++vF l
  Tp57577_TGAC_v2_mRNA11526 211 FFTCILQKTYIERDILGIPIEFAKTH-LQRMEGRDVTLFVDKDRTWNVDLKLNSNNNQFTLSGGWSKFRDHYNLKFGDVCVFIL 293
                                78888899999************999.34456789***9********************************************9 PP

                                -SSSEE..E CS
                         B3  85 dgrsefelv 93 
                                ++  +++  
  Tp57577_TGAC_v2_mRNA11526 294 NK-CNGTVS 301
                                75.444333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.9E-1610106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-1412106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.75514108IPR003340B3 DNA binding domain
CDDcd100172.19E-814105No hitNo description
SMARTSM010192.4E-615108IPR003340B3 DNA binding domain
CDDcd100179.13E-18197308No hitNo description
Gene3DG3DSA:2.40.330.102.0E-19205308IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-20207305IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.0E-14211310IPR003340B3 DNA binding domain
PROSITE profilePS5086314.142211310IPR003340B3 DNA binding domain
PfamPF023621.4E-14211302IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MSSQELDHGS NSVHFFKIIL QTTLQQGKLR VPISFVRRHW KGITNPVTLR LPNSTEKKVS  60
WEKTSDYDVW FCDGWKEFAN YLSLGDSQLL VFQYQGNSLF NVIGFGKCGL EIKYPLRETS  120
EEYEDVEESD CSLKITEDPS SSRFKKTKSP SQSSKIFKKM KINAKESKHG WTCIYGEFLK  180
FLAGSSCDNL KKRGYDLYEK VMTNFDSDKN FFTCILQKTY IERDILGIPI EFAKTHLQRM  240
EGRDVTLFVD KDRTWNVDLK LNSNNNQFTL SGGWSKFRDH YNLKFGDVCV FILNKCNGTV  300
SFQVVIFSLE KDMNTPYFEG NYLIYLVSII FA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11526
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024636868.11e-159B3 domain-containing protein REM8
TrEMBLA0A396IHE61e-158A0A396IHE6_MEDTR; Putative transcription factor B3-Domain family
STRINGAES918791e-156(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF140231017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.14e-17B3 family protein