PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11530
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 488aa    MW: 56865.1 Da    PI: 7.0163
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11530genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.48.4e-1620111199
                                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                                ffk+  ++ +l+ g++++p+ f++ h+g+   s  + l++++ ++We+ l  +k ++ ++++kG keF+    L+ g +v+F++
  Tp57577_TGAC_v2_mRNA11530  20 FFKIV-TPTNLQDGNIRIPNAFTKMHSGN--ISNPMFLNTPDDKKWEIHL--TKEDDNIWIQKGFKEFATHYSLDYGHMVMFQY 98 
                                67776.777888888***********888..5556***************..******************************** PP

                                -SSSEE..EEEEE-S CS
                         B3  85 dgrsefelvvkvfrk 99 
                                +++s f  +v++f+k
  Tp57577_TGAC_v2_mRNA11530  99 EKNSHF--NVHIFDK 111
                                999999..****998 PP
2B349.48.3e-16228316298
                                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                                f+v ++ ++ ++  +++p +f +++  k+e+s +++l+   + r+W vk+  ++++    +++GWk F+++n+Lk+gD+++F++
  Tp57577_TGAC_v2_mRNA11530 228 FTVVMTYSYVNQ-YMYVPLDFDQKNL-KEEQS-EIVLRVlDDERTWIVKY--CQRR----ISTGWKTFASDNNLKVGDVCLFEM 302
                                444444444444.38******98884.44444.7888883466*******..7776....889********************9 PP

                                -SSSEE..EEEEE- CS
                         B3  85 dgrsefelvvkvfr 98 
                                ++++   ++v +fr
  Tp57577_TGAC_v2_mRNA11530 303 INSKAYAFKVLIFR 316
                                98888888998887 PP
3B343.84.5e-144074851899
                                --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                         B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                +  +fa+++   k +s++l++   + + W+v+l    +  ++ l++GW++Fv++n+L++gD++vF+l+++++  + v++fr 
  Tp57577_TGAC_v2_mRNA11530 407 IQISFARKYLCLKGKSIKLRF---DEELWTVNLACYPSEPSIKLSDGWSQFVDENKLQAGDVCVFELVNEEDVVFDVHIFRG 485
                                667899999433345555554...5699*****88889899***************************99999999999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.67E-2115111IPR015300DNA-binding pseudobarrel domain
CDDcd100172.01E-1319110No hitNo description
PROSITE profilePS5086311.67419112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-2119112IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-1320111IPR003340B3 DNA binding domain
SMARTSM010195.4E-1020112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.0E-23220318IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-22221318IPR015300DNA-binding pseudobarrel domain
CDDcd100174.64E-17226316No hitNo description
PROSITE profilePS5086313.239226318IPR003340B3 DNA binding domain
PfamPF023622.3E-13228316IPR003340B3 DNA binding domain
SMARTSM010195.0E-15228318IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-19386484IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-19386484IPR015300DNA-binding pseudobarrel domain
CDDcd100173.74E-17389484No hitNo description
SMARTSM010193.2E-7392486IPR003340B3 DNA binding domain
PfamPF023623.5E-12407485IPR003340B3 DNA binding domain
PROSITE profilePS5086311.956432486IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MSMTCNPRNN DTHPSSIIRF FKIVTPTNLQ DGNIRIPNAF TKMHSGNISN PMFLNTPDDK  60
KWEIHLTKED DNIWIQKGFK EFATHYSLDY GHMVMFQYEK NSHFNVHIFD KTTLEIEYHA  120
YGGNQQHHEQ NSPIENFDEQ LPCKKARQKS QIWSPQPYKK LRFDTSEDAG TSSKVHNNLP  180
KLVQVKEEND DTAVFRNMKH DQEHKNLTSK IEEALNKAKN YKSNNPFFTV VMTYSYVNQY  240
MYVPLDFDQK NLKEEQSEIV LRVLDDERTW IVKYCQRRIS TGWKTFASDN NLKVGDVCLF  300
EMINSKAYAF KVLIFRLDEE QHSTPPQVHG DEVNWLETAG ITEVESKTIM SNKGSMATQR  360
NSLQATPMSF KNSEAKKEAN QFTSTLENPH FTIKLKSNHW DVYKPRIQIS FARKYLCLKG  420
KSIKLRFDEE LWTVNLACYP SEPSIKLSDG WSQFVDENKL QAGDVCVFEL VNEEDVVFDV  480
HIFRGRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A5e-1521231933144B3 domain-containing transcription factor VRN1
4i1k_B5e-1521231933144B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11530
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592583.30.0B3 domain-containing transcription factor VRN1
TrEMBLG7IAW30.0G7IAW3_MEDTR; Putative transcription factor B3-Domain family
STRINGAES628340.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-38B3 family protein