PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA11535

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Protein Properties

Length: 450aa MW: 51979 Da PI: 7.3015

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA11535	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	39.3	1.2e-12	150	235	1	89
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+ +t+s+v + +++pkkf +eh + ++ tl+ + + +++++y+ + ++ ++++GWk F + +L+ D++ F Tp57577_TGAC_v2_mRNA11535 150 FDVRMTKSYVDGHF-MWIPKKFSREHlnN--YNG--ISTLQVGKDNPIKMNIRYNDNTEKSTMGGGWKLFSQNYNLEIDDSCNF 228 44456666666665.*********642..323..34666667777777777799999999******************** PP EE-SSSE CS B3 83 kldgrse 89 ++++r+ Tp57577_TGAC_v2_mRNA11535 229 EMTQRQP 235 *887643 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.6E-15	143	234	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.69E-16	143	232	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.37E-12	148	233	No hit	No description
PROSITE profile	PS50863	9.46	149	246	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.6E-10	150	236	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MSFTKRPEFR KIVQDQKTNG IPKHYGEKYW KGTPNPIILR LPNDFEQEIY WVESNGGSHF 60 KVKIFGPNGL EINYADIKSV NEEVVEVTEK VTEIIEVRDD ESDDEIEILK QAQRTRNGKR 120 KFQSRNRGNM VKKATKYPTN EAVNDENPFF DVRMTKSYVD GHFMWIPKKF SREHLNNYNG 180 ISTLQVGKDN PIKMNIRYND NTEKSTMGGG WKLFSQNYNL EIDDSCNFEM TQRQPPSFIA 240 TINRARKGPS PKNLQGYRGR SSSRDNNIDV RKCNFKGTSS NRRAIADSKG RNVMKHDTFE 300 LTVNSSLYPY VPNAFLRRHK ECWGKFVELK VDEKSWSVKV KYYPGENNNN FQLPIVLNAD 360 EIPADNSTKK IVNNNTNEIF KEIDAAERQN GNDAAMITTS KRQNDNDFNH SAYEEFLEEE 420 IAQVHVSDSE EEDVAETQIM LQQPALPHM*

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MSFTKRPEFR KIVQDQKTNG IPKHYGEKYW KGTPNPIILR LPNDFEQEIY WVESNGGSHF  60
KVKIFGPNGL EINYADIKSV NEEVVEVTEK VTEIIEVRDD ESDDEIEILK QAQRTRNGKR  120
KFQSRNRGNM VKKATKYPTN EAVNDENPFF DVRMTKSYVD GHFMWIPKKF SREHLNNYNG  180
ISTLQVGKDN PIKMNIRYND NTEKSTMGGG WKLFSQNYNL EIDDSCNFEM TQRQPPSFIA  240
TINRARKGPS PKNLQGYRGR SSSRDNNIDV RKCNFKGTSS NRRAIADSKG RNVMKHDTFE  300
LTVNSSLYPY VPNAFLRRHK ECWGKFVELK VDEKSWSVKV KYYPGENNNN FQLPIVLNAD  360
EIPADNSTKK IVNNNTNEIF KEIDAAERQN GNDAAMITTS KRQNDNDFNH SAYEEFLEEE  420
IAQVHVSDSE EEDVAETQIM LQQPALPHM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA11535

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11472	6	24

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA11535