PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11538
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 274aa    MW: 32372.4 Da    PI: 10.0197
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11538genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.65.3e-14167254896
                                -HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                         B3   8 sdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                                  + k  ++++p +f +++    +    +   +++   + r+W+v+++y+  ++  v ++GWk F k+ +L+ gD++ Fk++++
  Tp57577_TGAC_v2_mRNA11538 167 RTYAKGYLFRIPCDFSRRYmegfE----GIARIRMVG-EDRTWKVEVKYDPERDYSVVKSGWKPFSKEYNLQIGDVCKFKMTRS 245
                                44455567999999*999964332....334677666.78****************************************8876 PP

                                SEE..EEEE CS
                         B3  88 sefelvvkv 96 
                                +   +++++
  Tp57577_TGAC_v2_mRNA11538 246 EPLCFTITI 254
                                666555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.16E-123100IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.3E-9699IPR015300DNA-binding pseudobarrel domain
CDDcd100171.71E-7897No hitNo description
SMARTSM010190.03210100IPR003340B3 DNA binding domain
SuperFamilySSF1019361.92E-16157257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.5E-16158257IPR015300DNA-binding pseudobarrel domain
CDDcd100172.73E-15159256No hitNo description
PROSITE profilePS5086311.702160258IPR003340B3 DNA binding domain
SMARTSM010197.7E-11161258IPR003340B3 DNA binding domain
PfamPF023624.6E-11170255IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MSLNFSPPKF FKIIQNHELQ NGQLWVPKKF VEKYWKGIPN PVVITLPNGV QQPLFWVKRD  60
HHIWLLKNWD KIAKFLKIGY LALFKYMGGS CFQLNIFGLN SLEIDYSNFI DQAQFVQVTD  120
EHDTTEQNIS RNKFVDETDI SSTSQRRKRG TNRGVTNIPS FELTLTRTYA KGYLFRIPCD  180
FSRRYMEGFE GIARIRMVGE DRTWKVEVKY DPERDYSVVK SGWKPFSKEY NLQIGDVCKF  240
KMTRSEPLCF TITIKRASEE RSRKKLFMFF IFE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11538
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024634076.15e-74putative B3 domain-containing protein Os03g0621600 isoform X2
TrEMBLA0A2K3LI981e-171A0A2K3LI98_TRIPR; B3 domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11472624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-13B3 family protein