PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11539
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 331aa    MW: 38699.7 Da    PI: 7.8171
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11539genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.22.7e-17131052100
                                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                                fkv +   +l+++ l++p++f++++g++   s  +tl+ ++g +W+++  +++ +  +++++GW++F++   +  g f+vFk++
  Tp57577_TGAC_v2_mRNA11539  13 FKVIL-DTTLENKELMIPRSFVKKYGKE--LSNPVTLMLPNGDKWKINW-IKRDDHDVWFQNGWEKFAQHYSMSFGHFLVFKFE 92 
                                55553.45667788***********955..77889**************.4666667*************************99 PP

                                SSSEE..EEEEE-SS CS
                         B3  86 grsefelvvkvfrks 100
                                ++s+f   v++f+ks
  Tp57577_TGAC_v2_mRNA11539  93 KESQF--QVMIFDKS 105
                                98999..9*999985 PP
2B355.78.9e-182413281199
                                HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                         B3  11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                                + ++ l +p  f +++ +gk  +++  ++  e+ ++W++k++++  s+r++l +GW + v++ +Lk+gD++vF+l++ ++ +++
  Tp57577_TGAC_v2_mRNA11539 241 SYLQHLFIPTWFSKQYlNGK--KGIATIVIGEEDKTWDLKFKFNDVSNRTMLHAGWGSIVEEYDLKVGDICVFELIDGKSISFK 322
                                4456699******9997666..56789999**********************************************88999999 PP

                                EEEE-S CS
                         B3  94 vkvfrk 99 
                                v+++r+
  Tp57577_TGAC_v2_mRNA11539 323 VHIVRA 328
                                999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.0E-238105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-239105IPR015300DNA-binding pseudobarrel domain
CDDcd100173.04E-1711103No hitNo description
PROSITE profilePS5086314.01511105IPR003340B3 DNA binding domain
SMARTSM010192.4E-1812105IPR003340B3 DNA binding domain
PfamPF023622.1E-1413104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-19230329IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-21230327IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.788231329IPR003340B3 DNA binding domain
CDDcd100171.37E-21232327No hitNo description
SMARTSM010196.1E-11234329IPR003340B3 DNA binding domain
PfamPF023624.9E-15239328IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MSIDQLHKSQ CFFKVILDTT LENKELMIPR SFVKKYGKEL SNPVTLMLPN GDKWKINWIK  60
RDDHDVWFQN GWEKFAQHYS MSFGHFLVFK FEKESQFQVM IFDKSALEID YLSKGLSSRD  120
NDDDQRNNQH HDEDAEKKDN DNNNYIEISD DENEMLRSSS PQPHKRMKIN DGSSQRKELK  180
KEKINLVQEV KGGNKTSFFK AKNRSTNNEA MTRNEALKDT TRRAMDLHFD NPSFIRPLHQ  240
SYLQHLFIPT WFSKQYLNGK KGIATIVIGE EDKTWDLKFK FNDVSNRTML HAGWGSIVEE  300
YDLKVGDICV FELIDGKSIS FKVHIVRANA *
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11539
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024640573.11e-77B3 domain-containing protein REM19
RefseqXP_027189403.18e-77uncharacterized protein LOC101507713
TrEMBLG7JXZ71e-137G7JXZ7_MEDTR; B3 DNA-binding domain protein
STRINGAES970511e-138(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-35B3 family protein