PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11540
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 300aa    MW: 33066.4 Da    PI: 7.2819
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11540genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047117138223
                                EETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                +C+ C+++Fs++  L  H++ H
  Tp57577_TGAC_v2_mRNA11540 117 SCNFCKRRFSSSQALGGHQNAH 138
                                7******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.866116143IPR007087Zinc finger, C2H2
SuperFamilySSF576673.9E-5117143No hitNo description
PROSITE patternPS000280118138IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MAAAANQSSA TSESISDKVC DDENNVNNNE VTMKGKEVIV SEQHQPLKTN TDLLLEFVKL  60
SSDNSIPRSN VREQDFFTPS KDLGASSSLL PGANNNPKPN NEENTKEKSS DSRSDLSCNF  120
CKRRFSSSQA LGGHQNAHKR ERALAKHCHE IQNGFGTPHY PFPYYTSYPS LSSSYYGIGS  180
YNKALGIKMN SMIQKPNYSW TPPPYRFGST PKWTPTQEMR NFSSLDRLKI ESVNANNEKS  240
APNNMMKLDV GESSINVDTK SNSDVDKSTV VVTGSDHHDT NKKEASHSES TGLDLSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11540
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004487223.17e-92zinc finger protein 1-like
TrEMBLA0A2K3LXE40.0A0A2K3LXE4_TRIPR; Zinc finger protein 3-like
STRINGXP_004487223.13e-91(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24625.15e-13zinc finger protein 7