PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11567
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NF-X1
Protein Properties Length: 504aa    MW: 56991 Da    PI: 8.609
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11567genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.96.7e-063150120
                   zf-NF-X1  1 CGkHkCqklCHeGpCppCpq 20
                               CG+H+C++ C+ G+CppC++
  Tp57577_TGAC_v2_mRNA11567 31 CGRHPCKRRCCDGDCPPCSE 50
                               ******************85 PP
2zf-NF-X121.84.1e-075276119
                   zf-NF-X1  1 CG......kHkCqklCHeGpCppCp 19
                               CG      +HkCq++CH+GpC pCp
  Tp57577_TGAC_v2_mRNA11567 52 CGkrlrcrNHKCQSPCHRGPCAPCP 76
                               777777779***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004380.0113150IPR000967Zinc finger, NF-X1-type
PfamPF014220.00113149IPR000967Zinc finger, NF-X1-type
CDDcd060084.66E-114896No hitNo description
PfamPF014221.9E-45276IPR000967Zinc finger, NF-X1-type
SMARTSM004385.5E-45877IPR000967Zinc finger, NF-X1-type
SMARTSM0043841121136IPR000967Zinc finger, NF-X1-type
PfamPF014222.6125135IPR000967Zinc finger, NF-X1-type
SMARTSM00438120144189IPR000967Zinc finger, NF-X1-type
PfamPF0142296144153IPR000967Zinc finger, NF-X1-type
SMARTSM004382.9226258IPR000967Zinc finger, NF-X1-type
PfamPF014220.071226237IPR000967Zinc finger, NF-X1-type
SMARTSM004380.093268286IPR000967Zinc finger, NF-X1-type
PfamPF014220.29269285IPR000967Zinc finger, NF-X1-type
SMARTSM0043826331360IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
XXXXXXXXXX XXXXXXXXXX XXXXXQTLRD CGRHPCKRRC CDGDCPPCSE ICGKRLRCRN  60
HKCQSPCHRG PCAPCPIMVT ISCACGETHF EVPCGTEMDQ KPPKCRKQCP IKPLCRHALI  120
CKPHKCHYGA CPPCRLPCAE EYQCGHACKL RCHGARPPPN LEFTLKPKKK KNTQQSEIVP  180
GTQCPPCPEL EWRSCVGQHM GAERMMVCSN KSQFSCENLC GNPLPCGNHY CTKTCHPLEN  240
QSSTNQSIRS EACEDCSLSC QKERKPKCQH HCPRRCHPGD CPPCKVLVKR SCHCGAMVHA  300
FECIYYNSLS AKDQETARSC GGPCHRKMPN CTHLCPETCH PGECPNPDKC GKKVTVRCKC  360
QTLKKEWLCQ DVQAAHNRAG CNPSDIPKNQ FGVGLIPCNS DCKSKVQVVE SELQLRKSRV  420
TEVKEPDNEK SVPKRRKRRE RVVESNEPTI LQKIISRTKQ VLLFIFFLFI LVAATHYGYK  480
GLLQLNDWMN KVDEQRHRSS RIR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1432438PKRRKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11567
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1407341e-165BT140734.1 Medicago truncatula clone JCVI-FLMt-22I2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500492.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A1S2Y8E70.0A0A1S2Y8E7_CICAR; NF-X1-type zinc finger protein NFXL2
STRINGXP_004500492.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102253237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors