PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11646
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GATA
Protein Properties Length: 240aa    MW: 26820.8 Da    PI: 8.3663
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11646genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.74.5e-20171205135
                       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                C++Cg+ +Tp+WR gp+g+ktLCnaCG++y++ +l
  Tp57577_TGAC_v2_mRNA11646 171 CHHCGADNTPQWRAGPNGPKTLCNACGVRYKSGRL 205
                                *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.0E-17165215IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.886165201IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-16166229No hitNo description
Gene3DG3DSA:3.30.50.102.0E-15169203IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.13E-15170219No hitNo description
PfamPF003206.5E-18171205IPR000679Zinc finger, GATA-type
PROSITE patternPS003440171196IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDGLSIVDDL LDFSSDIGED DDDDKSKKSV PSLKPKCSDP PSLSPLGLDD ANHSFPEYAE  60
EELEWLSNKD AFPAVETFVD ISCIQPDMSK YQKTTPTLEN STSSSNNSNN SSNSITLLSG  120
YNQMKFPVRA RSKSRSKPRL DTLNQQFPWK QPSTKISREQ VRPTSNIERK CHHCGADNTP  180
QWRAGPNGPK TLCNACGVRY KSGRLVPEYR PANSPTFRRD VHSNSHRKVL EMRRQKGMG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11646
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467175.11e-118GATA transcription factor 1
TrEMBLA0A2K3PKR61e-177A0A2K3PKR6_TRIPR; GATA transcription factor 1-like protein (Fragment)
STRINGAES937984e-99(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85372941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.12e-39GATA transcription factor 1