PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11660
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 204aa    MW: 23894.2 Da    PI: 4.5404
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11660genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.51.8e-16571391096
                                HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                         B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                                v++ gr  +p  fa+   +k +  ++ +l+d++gr W vk+  r  +g+ ++ +GWk+F ++n L+e+Df+vF++++++ f  +
  Tp57577_TGAC_v2_mRNA11660  57 VGEGGRPLIPIAFAKLVHLKRRVMVDFILRDRRGRDWHVKV--RPIGGKLYFDDGWKRFGEDNYLEENDFLVFTRIENNVF--M 136
                                56778899******88899999999****************..*******************************9988888..6 PP

                                EEE CS
                         B3  94 vkv 96 
                                +k+
  Tp57577_TGAC_v2_mRNA11660 137 FKI 139
                                655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010197.5E-748143IPR003340B3 DNA binding domain
PROSITE profilePS5086312.66148143IPR003340B3 DNA binding domain
SuperFamilySSF1019361.82E-1657143IPR015300DNA-binding pseudobarrel domain
PfamPF023621.7E-1457140IPR003340B3 DNA binding domain
CDDcd100172.55E-1457140No hitNo description
Gene3DG3DSA:2.40.330.102.1E-1662141IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MSRLFDESIL HRSNWGSDMV CSEVKVEELM RLFYMTQVRS CLSKEVLALG SKSRVLVGEG  60
GRPLIPIAFA KLVHLKRRVM VDFILRDRRG RDWHVKVRPI GGKLYFDDGW KRFGEDNYLE  120
ENDFLVFTRI ENNVFMFKIH EFSSMCEKIK VMDEEEENNM MEDEEELDDD DNNEDHDDVD  180
DGDVNMIDAY SKLCCVKTEQ LKC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11660
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3KCK71e-82A0A2K3KCK7_TRIPR; B3 domain-containing protein
STRINGXP_004497762.18e-35(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF128521124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.18e-07B3 family protein