PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA11769

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

C3H

Protein Properties

Length: 219aa MW: 24423.6 Da PI: 9.0197

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA11769	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22	2.9e-07	37	59	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C Gd+C FaHg Tp57577_TGAC_v2_mRNA11769 37 NPCPEFRKLGNCTKGDSCYFAHG 59 59********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	7.06E-6	32	63	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.5E-6	33	61	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.798	33	61	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.3E-4	33	60	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.9E-5	37	59	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	27	69	92	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
VRKCQRGRSH DWTECPYSHP GEKARRRDPQ KYNYSGNPCP EFRKLGNCTK GDSCYFAHGV 60 FECWLHPSRY RTQLCNDGTA CRRRVCFFAH TINQLRISTK ASPESFVSSP TSVLDSPTGK 120 SRHSVVPVNV QELVGFMQET RVDDPGRVLQ MGCVFGSPRG GFLSLPSTSE GVIMERVESG 180 RDLRAKIYAK FSRMNSNSND GVVSVPVPDI GWVSELVN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA11769

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003603107.1	1e-130	zinc finger CCCH domain-containing protein 20
Swissprot	Q9M0G2	9e-62	C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBL	A0A2Z6N5E3	1e-141	A0A2Z6N5E3_TRISU; Uncharacterized protein
STRING	AES73358	1e-130	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2056	31	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29190.1	4e-64	C3H family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA11769

Publications ? help Back to Top
Dokládal L, et al. cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase. Front Plant Sci, 2015. 6: p. 985 [PMID:26617625] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]