PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11881
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ARF
Protein Properties Length: 753aa    MW: 83418.6 Da    PI: 8.5175
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11881genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.94.6e-24153254199
                                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                f k+lt+sd+++ g +++p+ +ae++        +++ +  t++ +d +g++W++++iyr++++r++lt+GW++Fv++++L +g
  Tp57577_TGAC_v2_mRNA11881 153 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAG 234
                                89****************************986445444..8****************************************** PP

                                -EEEEEE-SSSEE..EEEEE-S CS
                         B3  78 DfvvFkldgrsefelvvkvfrk 99 
                                D++vF   + ++++l+v+++r+
  Tp57577_TGAC_v2_mRNA11881 235 DSIVFL--RGENAQLYVGIRRA 254
                                ******..4489999****997 PP
2Auxin_resp116.42.4e-38326409183
                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                                a++ a+++++FevvY+Prast+eF+vkv+ v++a++++++ GmRfkm fetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  Tp57577_TGAC_v2_mRNA11881 326 AMRLAASNQTFEVVYYPRASTPEFCVKVSAVKAAMRIQWCSGMRFKMPFETEDSSRISWfMGTISSVHVVDPIRWPNSPWRLLQ 409
                                567899****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-38143256IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.23E-29148254IPR015300DNA-binding pseudobarrel domain
CDDcd100171.23E-21152253No hitNo description
PfamPF023622.1E-22153254IPR003340B3 DNA binding domain
PROSITE profilePS5086313.042153255IPR003340B3 DNA binding domain
SMARTSM010191.4E-22153255IPR003340B3 DNA binding domain
PfamPF065073.6E-33326409IPR010525Auxin response factor
PROSITE profilePS5174516.924640720IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 753 aa     Download sequence    Send to blast
LWGCKIHVCE TKEAKIQFST AHFSLNFCFL ASDKKSKQSF KPMKEGEKSL DPQLWHACAG  60
GMVQMPSVNT KVFYFPQGHA EHAQSNVDFG DSFRIPPLIL CRVGSVKFLA DPETDEVFSK  120
ITLIPLRNSE LENEDSDGFD GNVSENSEKP SSFAKTLTQS DANNGGGFSV PRYCAETIFP  180
RLDYSAEPPV QTVIAKDVHG EVWKFRHIYR GTPRRHLLTT GWSSFVNQKK LVAGDSIVFL  240
RGENAQLYVG IRRAKRGIVN GLETPSGWSS SNGSCGLGVG GFGGAFSVFL REENNKMLRN  300
GIGDGGVGGN LGGGRVKVSG ESVKEAMRLA ASNQTFEVVY YPRASTPEFC VKVSAVKAAM  360
RIQWCSGMRF KMPFETEDSS RISWFMGTIS SVHVVDPIRW PNSPWRLLQV TWDEPDLLHN  420
VKRVSPWLVE LVSNMSVIHL SPFSPPRKKL RFPQHPDFPL DVVQFPIPTF SGNPLNPLCC  480
VSSSDHYNAP ATGIQGARHA QIGISLSDLH LNNSNNKLQL GVFPKNPETT ISNDKSKESL  540
SCLLTIGNSH KRSLEIKSDN NVKRHQFLLF GQPILTEQQI SRKVSSDDVL LSQNKDKEKW  600
YFSDTTTTTT QSSISEQFSP AKSSTTSASA EFCWQLGLDT GHCKVFLESE DVGRTLDLSC  660
VGSYEELYRK LAKMFGIERS EMLSRVLYRD ATGTVKQTGE EPFSDFMKTA KRLTILMDSA  720
SKDTRRVCIT GTRNAERGLD ASNKTGPMSI FA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A6e-775343622359Auxin response factor 1
4ldw_A6e-775343622359Auxin response factor 1
4ldw_B6e-775343622359Auxin response factor 1
4ldx_A7e-775343622359Auxin response factor 1
4ldx_B7e-775343622359Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11881
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2076000.0AC207600.4 Medicago truncatula chromosome 2 BAC clone mth2-31i16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465298.10.0auxin response factor 10
RefseqXP_024632564.10.0auxin response factor 10
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLG7IRU10.0G7IRU1_MEDTR; Auxin response factor
STRINGAES675070.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]